Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527792

Identifier: 188527792

GI number: 188527792

Start: 1016195

End: 1017262

Strand: Direct

Name: 188527792

Synonym: HPSH_05140

Alternate gene names: NA

Gene position: 1016195-1017262 (Clockwise)

Preceding gene: 188527774

Following gene: 188527793

Centisome position: 63.17

GC content: 40.26

Gene sequence:

>1068_bases
TTGAAACATTTAACCCCACTCACTCACACCATCTTTAAAGCCTTATTGCTAGGCACAGCCTTGAGTGCATCTTTAAGCTT
AGCCGCAGCAGAAAGCCCCGCTAAAACAGAGCCTAAATCCGCTAAAGGGGTTAAAAACAAGCCCAAATCGCCCGTTACTA
AAGTCATGATGACCAATTGCGATAGTATTAAAGACTTTAACGCTAAGCAAAAAGAAGTTTTAAAAGCCGCTTATCAATTC
GGCTCTAAAGAAAATTTAGGCTATGAAATGGCAGGTATTGCATGGAAAGAGTCATGCGCAGGGGTTTATAAAATCAATTT
TTCGGATCCGAGTGCGGGCGTGTATCATTCCTATATCCCAAGCGTTCTAAAAAGCTATGGGCATAATGATAGCCCCTTTT
TGCGTAATGTGATGGGGGAATTGCTCATTAAAGACGATGCGTTTGCTTCTGAAGTGGCTTTAAAAGAGTTGCTCTATTGG
AAAACACGCTACCATGACAATCTAAAAGACATGATTAAATCTTACAACAAGGGCAGTCGTTGGGAAAGGAGTGAAAAGTC
TAACGCTGAAGCTGAAAAATATTACGAAGAGATACAAGACAGAATCAGGCGTTTGAAAGAATCTAAAATCTTTGATTCGC
AGTCTAGTAATGACCAAGAATTGCAAAAAAGCGCTAATAGCAACTTGGATTTAGATCCTATCGGCAACGCCATGCCCCAA
ACTTTAGCTAAAACAGAGACTAAAGAAACTCAAACAGAAGAAACCCAAGCAGAAAAATCCCAAGAAATGAAAGAGGCAAC
TAGCGAGCAAACAACCAGTAAGCCAGAAAAAGCAAAAGATAAACCCATGTATTTGGCTCAAATCAACAGCACTGATTTCA
CACCCGCTAAAAAAAGCCCTCAAAAACCGGCTAAAGTGAGTCAAAAACGCTCCCCCAAAAACAATAAAAATAATATTAAA
AGCAGCACCAAAACCGCTTCCAAAAAACAAGAAGTGTGCAAAAATTGCTCTCCAGGGCAAAGGAATGCGATTTTAGCTAA
CCGCATCACCCTCATGCAAGAGCTTTAA

Upstream 100 bases:

>100_bases
TCCCTAAAAAACAAAATCACTTTTAAGACTAAATCATGTTAGAATTATACTTGAATTTATTCTTAGTTCAGTTTATTTCT
CAATACAAAAGGTAGGCGTT

Downstream 100 bases:

>100_bases
AAAGTCCTAAAAATGGCGCAAAAAACTCTTTTGATCATCACTGATGGCATCGGGTATCGTAAAGATAGCGACTATAACGC
ATTCTTTCATGCTAAAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF
GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW
KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ
TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK
SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL

Sequences:

>Translated_355_residues
MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF
GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW
KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ
TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK
SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL
>Mature_355_residues
MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNCDSIKDFNAKQKEVLKAAYQF
GSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIPSVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYW
KTRYHDNLKDMIKSYNKGSRWERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ
TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSPQKPAKVSQKRSPKNNKNNIK
SSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39766; Mature: 39766

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
DSIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIP
HHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHCCEEEEEECCCCCCCHHHHHHH
SVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSR
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
WERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCC
QKPAKVSQKRSPKNNKNNIKSSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKHLTPLTHTIFKALLLGTALSASLSLAAAESPAKTEPKSAKGVKNKPKSPVTKVMMTNC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
DSIKDFNAKQKEVLKAAYQFGSKENLGYEMAGIAWKESCAGVYKINFSDPSAGVYHSYIP
HHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHCCEEEEEECCCCCCCHHHHHHH
SVLKSYGHNDSPFLRNVMGELLIKDDAFASEVALKELLYWKTRYHDNLKDMIKSYNKGSR
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
WERSEKSNAEAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANSNLDLDPIGNAMPQ
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
TLAKTETKETQTEETQAEKSQEMKEATSEQTTSKPEKAKDKPMYLAQINSTDFTPAKKSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCC
QKPAKVSQKRSPKNNKNNIKSSTKTASKKQEVCKNCSPGQRNAILANRITLMQEL
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA