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The map label for this gene is ygcF [C]

Identifier: 188527756

GI number: 188527756

Start: 976001

End: 976756

Strand: Direct

Name: ygcF [C]

Synonym: HPSH_04915

Alternate gene names: 188527756

Gene position: 976001-976756 (Clockwise)

Preceding gene: 188527755

Following gene: 188527757

Centisome position: 60.68

GC content: 35.85

Gene sequence:

>756_bases
ATGAAACTCCCGGTCGTTGAGAGCTTTTTTTCCTTACAAGGTGAAGGAAAAAGGATAGGCAAACCCAGTCTTTTTTTGCG
CTTAGGGGGGTGTAATCTTTCATGTAAGGGTTTTAATTGTAAAACCATATTGCATGATGAAATCCTAACAGGTTGCGATA
GCTTGTATGCCGTGCATCCTAAATTCAAAGAAACTTGGGATTATTACAATGAGCCTCAATCTTTGATTGAACGATTAGAG
GATTTAACCCCTAATTATAAGAATTTTGATTTCATTCTTACAGGCGGGGAGCCAAGCTTGTATTTTAATAACCCTATTTT
AATCAGCGTTTTAGAGCATTTTTATCACAAAAAAATCCCTTTATTTGTAGAGAGTAACGGCTCTATTTTTTTTGAATTTA
ACCCCATTTTAAAAGAATTGCATTTCACCTTGAGCGTCAAACTCTCTTTTTCTTTAGAGGAAGAAAGCAAGCGAATCAAC
CTTAAAGCCTTGCAAAATATTTTAAATAACGCTAAAAGCGCGCATTTTAAATTTGTTTTAGAGAGCAAAAACGCCACTCA
ATCTATCGCAGAAATTCAAAACCTTTTGAAACAACTTTCATTAAAAAATCATGAAATCTTTTTAATGCCCTTAGGCGCAA
CGAATAAGGAATTAGACAAAAATCTCAAAACCCTAGCCCCCCTAGCCCTAGAGCATGGTTTTAACCTTAGCGACAGACTC
CATATCCGCTTGTGGGACAATCAAAAAGGGTTTTAA

Upstream 100 bases:

>100_bases
AAGGCATTCAAAATTTGTGGCATGATAAGGATTTTTTTAATAAAATCATTAGCGATGAAAAACAATGCTTTTTCCACGCT
AAGCCCCTACACCAGATCCC

Downstream 100 bases:

>100_bases
AAAATCAATCATGACCATCAAAGTTTTTTCGCCCAAATACCCTACTGAATTGGAAGAATTTTATGCCCAACGCATCGCTG
ATAACCCTTTAGGGTTTATC

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Co PQQ Synthesis Protein Conjectural; Radical Activating; Radical Sam Domain Protein; Phosphoribosylaminoimidazole-Succinocarboxamide Synthase; 7-Cyano-7-Deazaguanosine Biosynthesis Protein QueE; Radical SAM Protein; Radical SAM Family Protein; Organic Radical Activating

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHPKFKETWDYYNEPQSLIERLE
DLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKIPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRIN
LKALQNILNNAKSAHFKFVLESKNATQSIAEIQNLLKQLSLKNHEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRL
HIRLWDNQKGF

Sequences:

>Translated_251_residues
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHPKFKETWDYYNEPQSLIERLE
DLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKIPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRIN
LKALQNILNNAKSAHFKFVLESKNATQSIAEIQNLLKQLSLKNHEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRL
HIRLWDNQKGF
>Mature_251_residues
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHPKFKETWDYYNEPQSLIERLE
DLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKIPLFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRIN
LKALQNILNNAKSAHFKFVLESKNATQSIAEIQNLLKQLSLKNHEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRL
HIRLWDNQKGF

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28835; Mature: 28835

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEHHHHHHHCCHHHEEECC
KFKETWDYYNEPQSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKIP
CHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKFVL
EEEECCCCEEEEECHHHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHHCCCCCEEEEEE
ESKNATQSIAEIQNLLKQLSLKNHEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRL
ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
HIRLWDNQKGF
EEEEECCCCCC
>Mature Secondary Structure
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILHDEILTGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEHHHHHHHCCHHHEEECC
KFKETWDYYNEPQSLIERLEDLTPNYKNFDFILTGGEPSLYFNNPILISVLEHFYHKKIP
CHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFNPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKFVL
EEEECCCCEEEEECHHHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHHCCCCCEEEEEE
ESKNATQSIAEIQNLLKQLSLKNHEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRL
ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
HIRLWDNQKGF
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA