| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527757
Identifier: 188527757
GI number: 188527757
Start: 976767
End: 977252
Strand: Direct
Name: 188527757
Synonym: HPSH_04920
Alternate gene names: NA
Gene position: 976767-977252 (Clockwise)
Preceding gene: 188527756
Following gene: 188527758
Centisome position: 60.72
GC content: 42.59
Gene sequence:
>486_bases ATGACCATCAAAGTTTTTTCGCCCAAATACCCTACTGAATTGGAAGAATTTTATGCCCAACGCATCGCTGATAACCCTTT AGGGTTTATCCAACGCTTGGATCTTTTGCCTAGCATTAGCGGGTTCGTTCAAAAATTGCGCGAGCGTGGCGGGGAATTTT TTGGAATGAGAAAGGATAAAAAGCTCATTGGGATCTGCGGGCTTAATCCTATCAATAAGACAGAAGCAGAGCTGTGCAAA TTCCACATGGATAGCGCTTATCAATCCCAAGGGCTGGGTCAAAAACTCTATGAGAGCGTGGAGCGATACGCTTTTATCAA AGGCTATACTAAAATCTCTCTGCATGTGAGCAAAAGTCAAATCAAGGCATGCAATCTCTATCAAAAGCTGGGTTTTATGC CAATCAAAGAAGAAGATTGCGCGGTTGAGTTGGGTGGAGAAACTCTGATTTTCCCCACTCTTTTTATGGAAAAGATTCTG TCCTAA
Upstream 100 bases:
>100_bases AAAACCCTAGCCCCCCTAGCCCTAGAGCATGGTTTTAACCTTAGCGACAGACTCCATATCCGCTTGTGGGACAATCAAAA AGGGTTTTAAAAAATCAATC
Downstream 100 bases:
>100_bases TTGGCGCATCAATTTGAGCCCAAGCGATAATTTTAACTATCAAACTTTGATTAACACAGCCTAATTAATACTAAATTAGC CCTAAAACAAACGCTTGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTIKVFSPKYPTELEEFYAQRIADNPLGFIQRLDLLPSISGFVQKLRERGGEFFGMRKDKKLIGICGLNPINKTEAELCK FHMDSAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQIKACNLYQKLGFMPIKEEDCAVELGGETLIFPTLFMEKIL S
Sequences:
>Translated_161_residues MTIKVFSPKYPTELEEFYAQRIADNPLGFIQRLDLLPSISGFVQKLRERGGEFFGMRKDKKLIGICGLNPINKTEAELCK FHMDSAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQIKACNLYQKLGFMPIKEEDCAVELGGETLIFPTLFMEKIL S >Mature_160_residues TIKVFSPKYPTELEEFYAQRIADNPLGFIQRLDLLPSISGFVQKLRERGGEFFGMRKDKKLIGICGLNPINKTEAELCKF HMDSAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQIKACNLYQKLGFMPIKEEDCAVELGGETLIFPTLFMEKILS
Specific function: Unknown
COG id: COG0454
COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18375; Mature: 18244
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKVFSPKYPTELEEFYAQRIADNPLGFIQRLDLLPSISGFVQKLRERGGEFFGMRKDK CEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCC KLIGICGLNPINKTEAELCKFHMDSAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQ CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECHHH IKACNLYQKLGFMPIKEEDCAVELGGETLIFPTLFMEKILS HHHHHHHHHHCCCCCCCCCCEEEECCCEEEHHHHHHHHHCC >Mature Secondary Structure TIKVFSPKYPTELEEFYAQRIADNPLGFIQRLDLLPSISGFVQKLRERGGEFFGMRKDK EEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCC KLIGICGLNPINKTEAELCKFHMDSAYQSQGLGQKLYESVERYAFIKGYTKISLHVSKSQ CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECHHH IKACNLYQKLGFMPIKEEDCAVELGGETLIFPTLFMEKILS HHHHHHHHHHCCCCCCCCCCEEEECCCEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA