| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527672
Identifier: 188527672
GI number: 188527672
Start: 873916
End: 874311
Strand: Reverse
Name: 188527672
Synonym: HPSH_04470
Alternate gene names: NA
Gene position: 874311-873916 (Counterclockwise)
Preceding gene: 188527673
Following gene: 188527668
Centisome position: 54.35
GC content: 35.35
Gene sequence:
>396_bases ATGCAATACCCTAACCTACCTAATAGCGTGCTAGATTTCATACAACAGCCCGAAGTCAAAGAAATCACTAACGAACTTTT AAAGCAACTACAAAGCGCTTTAAATTCTAATAGTCTTTTTACGGATCAAGTGGAATTAAGCCTTAAAGGAATTGTAAGGA TTTTAGAAGTGCTTTTGAGTTTGGATTTTTTCAAAAACGCCAACGAGATTGATAGCAGTTTGAGAAACTCCATTGAATGG CTTAATAACGCCGGCGAGAGCTTGAAAGAAAAAATGAAAGAATACGAGAGCTTTTTTAATGATTTCAATACGAGCATGAA AGCGAACGAGCAAGAAGTAACCGATACACTAAACGCTAACACCCAAAACATTTTTTATTTAAAAAGGGCTGTATAA
Upstream 100 bases:
>100_bases AGCGCTAAAGGACATGCAAAAAGAAAGCGAGAAAGGGATAAAAGGACAAAAATTTGAAACGCCTAATCCTAACATAAAAA AGTGAATAAAAGGAAACCCC
Downstream 100 bases:
>100_bases ATCACAAGGAAATGTAATCCACTTCTTTGGGTCTTTGATGGCTAGCGATGAGTTGCTTACAGGTTGCAACGCCTTCCGAA GTGCCAACCATTAATAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 131
Protein sequence:
>131_residues MQYPNLPNSVLDFIQQPEVKEITNELLKQLQSALNSNSLFTDQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEW LNNAGESLKEKMKEYESFFNDFNTSMKANEQEVTDTLNANTQNIFYLKRAV
Sequences:
>Translated_131_residues MQYPNLPNSVLDFIQQPEVKEITNELLKQLQSALNSNSLFTDQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEW LNNAGESLKEKMKEYESFFNDFNTSMKANEQEVTDTLNANTQNIFYLKRAV >Mature_131_residues MQYPNLPNSVLDFIQQPEVKEITNELLKQLQSALNSNSLFTDQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEW LNNAGESLKEKMKEYESFFNDFNTSMKANEQEVTDTLNANTQNIFYLKRAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15113; Mature: 15113
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYPNLPNSVLDFIQQPEVKEITNELLKQLQSALNSNSLFTDQVELSLKGIVRILEVLLS CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LDFFKNANEIDSSLRNSIEWLNNAGESLKEKMKEYESFFNDFNTSMKANEQEVTDTLNAN HHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC TQNIFYLKRAV CCHHHHHHHCC >Mature Secondary Structure MQYPNLPNSVLDFIQQPEVKEITNELLKQLQSALNSNSLFTDQVELSLKGIVRILEVLLS CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LDFFKNANEIDSSLRNSIEWLNNAGESLKEKMKEYESFFNDFNTSMKANEQEVTDTLNAN HHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC TQNIFYLKRAV CCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA