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The map label for this gene is cagS [H]

Identifier: 188527629

GI number: 188527629

Start: 826078

End: 826677

Strand: Direct

Name: cagS [H]

Synonym: HPSH_04255

Alternate gene names: 188527629

Gene position: 826078-826677 (Clockwise)

Preceding gene: 188527628

Following gene: 188527632

Centisome position: 51.36

GC content: 33.33

Gene sequence:

>600_bases
ATGAGTAATAACATGCGAAAACTCTTCTCAATGATTGCTGACTCAAAAGATAAGAAAGAAAAACTTATTGAGAGTTTGCA
GGAGAACGAACTTTTAAACACTGATGAAAAAAAGAAAATCATAGATCAAATAAAAACCATGCATGATTTTTTCAAACAGA
TGCATACGAACAAGGGAGCGTTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGCGCTGTTATCAAAAGCATTGGT
GTTGATAAGTTTAAAAAGGTTTATCGATTGCTTGAGAGTGAGACTATGGAGCTGTTGTGCGCGATTGCAGAGAATCCTAA
TTTCTTATTCTCTAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGTAAGCCTATCATGTTCAAGATGA
GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGGCACTAAGCTCCCACTATTGAAATTGTTTGTGATGACAGATGAA
GAAGTGAATTTCTATGCTAATCTAAAAACCATTGACCAATATAACGACTATGTTAGGGATTTGCTGATGAAATTTGATCT
TGAAAAATACATGAAAGAAAAAGGAGTGCAAAATGCTTGA

Upstream 100 bases:

>100_bases
AAATTTTCACACAACAGATATTGTATAATTTTAATATAAAACTTTACGATTTAAACAATCTGAAGAGAAACAAAAATCCA
TTGAAGGGATCAAGAGCGAT

Downstream 100 bases:

>100_bases
TGTGGGAAACGAACAAAAAATCTCGGTGTAACTAACAAAATTCAGTTTGAAAAATATTTGTCTCAGGCAGAGATAGAATT
AAAAAATGGTGAGTGCTTTA

Product: cag pathogenicity island protein (cagS, cag13)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
VDKFKKVYRLLESETMELLCAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDE
EVNFYANLKTIDQYNDYVRDLLMKFDLEKYMKEKGVQNA

Sequences:

>Translated_199_residues
MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
VDKFKKVYRLLESETMELLCAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDE
EVNFYANLKTIDQYNDYVRDLLMKFDLEKYMKEKGVQNA
>Mature_198_residues
SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIGV
DKFKKVYRLLESETMELLCAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEE
VNFYANLKTIDQYNDYVRDLLMKFDLEKYMKEKGVQNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23639; Mature: 23508

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
LDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLCAIAENPNFLFSKFDRSILGI
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEVNFYANLKTIDQYNDYVRD
HHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLMKFDLEKYMKEKGVQNA
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGA
CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
LDKVLRNYMKDYRAVIKSIGVDKFKKVYRLLESETMELLCAIAENPNFLFSKFDRSILGI
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEVNFYANLKTIDQYNDYVRD
HHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLMKFDLEKYMKEKGVQNA
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]