| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527613
Identifier: 188527613
GI number: 188527613
Start: 813190
End: 813621
Strand: Direct
Name: 188527613
Synonym: HPSH_04175
Alternate gene names: NA
Gene position: 813190-813621 (Clockwise)
Preceding gene: 188527612
Following gene: 188527615
Centisome position: 50.55
GC content: 36.11
Gene sequence:
>432_bases ATGAAAACGAATTTTTATAAAATTAAATTACTATTTGCTTGGTGTCTTATCATTGGTATGTTTAACGCTCCGCTTAACGC TGACCAAAACACTGATATAAAAGATATTAGTCCTGAAGATATGGCACTAAATAGCGTGGGGCTTGTTTCTAGAGATCAAC TAAAAATAGAGATCCCTAAAGAAACCCTAGAGCAAAAAGTGGCCATACTCAATGACTATAATGATAAGAATGTTAATATC AAGTTTGATGACATAAGTTTAGGGAGTTTTCAACCTAATGATAATCTAGGTATCAATGCGATGTGGGGCATTCAAAATCT TCTCATGAGCCAAATGATGGGCGATTACGGCCCAAACAATCCTTTCATGTATGGTTATGCACCAACATATCCAGATTCAT CGTTTTTACCACCAGGCTTAGGGGGGTATTAA
Upstream 100 bases:
>100_bases AAACAAAATGCTCGATCAAAAAAATCAAAACAAAAATAGCGATTGAGTGGTATTAAAGCGCTAGAATAGTGCTAAAAATA AGAATAAAGGAGTCAAAAGT
Downstream 100 bases:
>100_bases CATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTATCGCAAGTCTCATCAGTCATCTCAAGCACAA GTGGTGTTGCAGGGCCATTT
Product: cag pathogenicity island protein (cagG, cag21)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNI KFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPGLGGY
Sequences:
>Translated_143_residues MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNI KFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPGLGGY >Mature_143_residues MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNI KFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPGLGGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16053; Mature: 16053
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPK CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCH ETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNN HHHHHHHHHHCCCCCCEEEEEECCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCC PFMYGYAPTYPDSSFLPPGLGGY CEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPK CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCH ETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNN HHHHHHHHHHCCCCCCEEEEEECCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCC PFMYGYAPTYPDSSFLPPGLGGY CEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA