Click here to switch to the map view.

The map label for this gene is 188527612

Identifier: 188527612

GI number: 188527612

Start: 812329

End: 813135

Strand: Direct

Name: 188527612

Synonym: HPSH_04170

Alternate gene names: NA

Gene position: 812329-813135 (Clockwise)

Preceding gene: 188527611

Following gene: 188527613

Centisome position: 50.5

GC content: 31.1

Gene sequence:

>807_bases
ATGAAACAAAGTTTGCGTGAACAAAAATTATTGAAAATTTTAGAAAATGATGTTTTGACGATTTTGGATAGTTTTTCTAA
TTATCTTTTTGAACTGAGAGAAGAATTGGATTTCATAGAAGAAGAAATGGAAGGCGAAATCACTGAACAAAACCTTACCA
CTCTTTATGATTTTTCTAACTTCTTAGAAGACCATGTCAATGTGTTTTATGAGAATGTTTTAAATATAGATGATGTCAAA
ACAGAACACCTTTATTCAGGTCTCATAGATAGTCTCAATGCTAATCTTCACTTTGTCAAGTCATTTCTCAGTAATCAGGA
TTTAGACTTCCGCTTTTTTAAAGAAATAAACGATGGGCAAGATCCCCAAAAAACACTATCAAGATTGATTCCTCTTCAAA
GTGGGAAAAATGACGCAAGCTCGTTTAAAGCAGATAATTCTTTTGTATCATTAGTTTATGTTTATGTTTACTTCATGCTA
GAAACTATCATGCAGTCGTATAGGATTCTCAGGTTACTAGAAAAACCTATCAATAACAACATAGACGAGGATATGCAAAG
CGATATAGAGAATTTTTTTGTTCAAGCGAATTTTTTAGAATACTATGTTCAGAACAAAATATACCCAACAAATCATGCCT
ATGACTTCACGCATTTAATCATGGACTCCATTGTTCCTAATTGGATTCAGGTTGATATGAGCGTTGAAGCTAAAAAGAAA
GAGCTTTTTGAAAAATATTTTCAAAACATTGATGAAGTAACAAACAAAATGCTCGATCAAAAAAATCAAAACAAAAATAG
CGATTGA

Upstream 100 bases:

>100_bases
GTATTTGTCAAAGAAATTGACAAGATTATACAAAATCGTAGTATCATAGATAAATATCAGGCCTTGAGGCAAATGTATCA
ACAAATAAAGGAGTATTAAA

Downstream 100 bases:

>100_bases
GTGGTATTAAAGCGCTAGAATAGTGCTAAAAATAAGAATAAAGGAGTCAAAAGTATGAAAACGAATTTTTATAAAATTAA
ATTACTATTTGCTTGGTGTC

Product: cag pathogenicity island protein (cagF, cag22)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFML
ETIMQSYRILRLLEKPINNNIDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDEVTNKMLDQKNQNKNSD

Sequences:

>Translated_268_residues
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFML
ETIMQSYRILRLLEKPINNNIDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDEVTNKMLDQKNQNKNSD
>Mature_268_residues
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFML
ETIMQSYRILRLLEKPINNNIDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDEVTNKMLDQKNQNKNSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31820; Mature: 31820

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCC
DPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFMLETIMQSYRILRLLEKPINNN
CHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHH
ELFEKYFQNIDEVTNKMLDQKNQNKNSD
HHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCC
DPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFMLETIMQSYRILRLLEKPINNN
CHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHH
ELFEKYFQNIDEVTNKMLDQKNQNKNSD
HHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA