| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527427
Identifier: 188527427
GI number: 188527427
Start: 608700
End: 609767
Strand: Direct
Name: 188527427
Synonym: HPSH_03215
Alternate gene names: NA
Gene position: 608700-609767 (Clockwise)
Preceding gene: 188527426
Following gene: 188527428
Centisome position: 37.84
GC content: 34.64
Gene sequence:
>1068_bases ATGAACCACCTTTTAATCCTCTACAATCCTTACTACCAGCGAGATGTCATACAACAACATTTAAGCGTTTTGCAGGAAAA ATCCCAAGTGGGTTTTGGTAAAATCCGATCAAAGCTCAACGATCAAGAAAAGCACCACTCTTTAGAAGAGATTTATAAAG CCACTAATGAAAAAAATTTTTTGCAGCTTTTTTTGACCGATTACGCTAATTTATTTGTCGCTAAGGTGGTAAAGGTTTCT AAAGATATTGATGAGAGTTTGATCCCTAGTTATTATAAAGAAAAAAATTTGGAAGTGGAAGACTTTTTTATTATCAGCGA TTTAAGGGAATTAGTCAGGGAAGACTTTAGCCTTTTAAGGGATCAATTTTTAGCCAATTTCATCGCACCCAACAACCACA CTTACGCCATTTATGGGAATAATTATGTCTATCCTTTGACGGTGAGGTTGAAAGAAGAGCGTTCTTATTTTTTAAGCGAT GGAAAACATTGTTTGAGCGTGTATAAAAGCAAAGAATATTTGATCATGCAAGAAAATTTCATGCGTTTTGTTTTTGGCAA AAGGCTTTTTTACCTCTTACACCCTGACAGCATCAATAACATCATCCATGCAGAATTAGAGCTTTTGCAAAGCGAAAACG ATCTCTTGAATGATTTTACAAGCATCATCGTCAAATACTCCAAAACCTTAGAATACGAAATTTATCTTTTTGCTAAAAAA GTCCTTTTAAAGGCTTGCGCAAAAGATTCTAGCCTTTATGATTTAGATTATAAAGTCCAAGGAAAATCTTTGATACTTGA AGATTTTTTCACTCAAAAGCCTAATCTTGGGAGCGTTAAATACTTGCTGATGCACAAAAGGGTTCAGTGCCATTTGGAAG AGAGTTTGAACAGATTTATTAATTTTTCTTTTCAAAAAAGTTTCAAGTTTTTTCAAGATATTCGCAATGAAGCCGTCCAT GAAAAAGCCCCGAGTTTGCATGAAGTAGAAAAGCTCAGGAATGAAATTTTAGGCATAGAAGGTATGAGCTTGTTGAAAAG CATTCTGACTCGCAAGGAAGTTTCATGA
Upstream 100 bases:
>100_bases ACGAATTGTTTGAAATTTTAAAAGAACTCATCCAGGAATACGAGAAAAATCCTGACGAGGTCAAGCAGAATCTCACAGAG ATTTTGAAATAAGGCAAGGC
Downstream 100 bases:
>100_bases AAGAATGCGATGAATTAAATCTATGCTTAATGCCGATTTGATAGCGCGAGATTTTAAAACTTATTTAGAGCCTTTAAGAG AGAAGAAAAATTTATTGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS
Sequences:
>Translated_355_residues MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS >Mature_355_residues MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNFLQLFLTDYANLFVAKVVKVS KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSD GKHCLSVYKSKEYLIMQENFMRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFINFSFQKSFKFFQDIRNEAVH EKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42018; Mature: 42018
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNF CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHH LQLFLTDYANLFVAKVVKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH DQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSDGKHCLSVYKSKEYLIMQENF HHHHHHHCCCCCCEEEEEECCEEEEEEEEEECHHHHHHHCCHHHHHHHCCCCEEEEHHHH MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK HHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFI HHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH NFSFQKSFKFFQDIRNEAVHEKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MNHLLILYNPYYQRDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHHSLEEIYKATNEKNF CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHH LQLFLTDYANLFVAKVVKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH DQFLANFIAPNNHTYAIYGNNYVYPLTVRLKEERSYFLSDGKHCLSVYKSKEYLIMQENF HHHHHHHCCCCCCEEEEEECCEEEEEEEEEECHHHHHHHCCHHHHHHHCCCCEEEEHHHH MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK HHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLLKACAKDSSLYDLDYKVQGKSLILEDFFTQKPNLGSVKYLLMHKRVQCHLEESLNRFI HHHHHHCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH NFSFQKSFKFFQDIRNEAVHEKAPSLHEVEKLRNEILGIEGMSLLKSILTRKEVS CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA