| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is fliD
Identifier: 188527405
GI number: 188527405
Start: 585942
End: 587999
Strand: Reverse
Name: fliD
Synonym: HPSH_03070
Alternate gene names: 188527405
Gene position: 587999-585942 (Counterclockwise)
Preceding gene: 188527406
Following gene: 188527404
Centisome position: 36.55
GC content: 42.23
Gene sequence:
>2058_bases ATGGCAATAGGTTCATTAAGCTCATTAGGGCTTGGCAGTAAGGTTTTGAATTACGATGTGATTGACAAGCTTAAGGACGC CGATGAAAAAGCGTTAATCGCCCCCTTAGACAAGAAAATGGAGCAAAATGTTGAAAAACAAAAAGCCCTAGTAGAAATTA AAACGCTCCTTTCATCTCTAAAAGGCCCGGTTAAAACGCTTTCGGATTATTCCACTTATATCAGCAGGAAAAGCAATGTT ACAGGCGATGCGTTGAGCGCGAGTGTGGGGGCTGGCGTGCCTATTCAAGATATTAAAGTGGATGTGCAAAATTTAGCGCA AGGCGATATTAACGAATTAGGGGCTAAATTTTCTTCAAGAGATGATATTTTTAGCCAAGTGGATACCACGCTCAAATTTT ACACGCAAAACAAGGACTACGCCGTTGATATTAAAGCAGGAATGACTTTAGGCGATGTGGCTCAAAGCATTACAGATGCT ACCAACGGCGAAGTGATGGGCATTGTGATGAAAACAGGAGGGAATGACCCCTACCAATTAATGGTGAATACCAAAAACAC CGGTGAGGACAACCGCATCTATTTTGGCTCACACCTCCAATCCACGCTCACCAACAAAAACGCCCTTTCTTTGGGGGTTG ATGGGAGCGGAAAAAGTGAAGCGAGTTTGAATTTAAAGGGGGCTGATGGGAGTATGCATGAAGTCCCCATCATGCTAGAA CTCCCTGAAAGCGCTTCTATCAAACAAAAAAACACCGCAATCCAAAAAGCAATAGAGCAGGCTTTAGAAAATGACCCTAA TTTTAAAGATTTGATCGCTAATGGGGATATTTCTATAGACACTCTTCATGGGGGGGAGTCTTTAATCATTAATGACAGGC GTGGGGGAAACATTGAAGTTAAAGGGAGTAAGGCTAAAGAGCTTGGGTTTTTGCAAACCACCACCCAAGAAAGCGATTTA TTGAAAAGCTCTCGCACCATCAAAGAGGGCAAATTAGAAGGGGTGGTTAGCTTGAATGGTCAAAGACTGGATTTGAGCGC TTTAACCAAAGCGAGTAACACTAGTGAAGAAAACACAGACGCTATCATTCAAGCGATCAATTCCAAAGAAGGCTTGAATG CGTTTAAGAACGCCGAAGGCAAGCTTGTGATCAATTCTAAAACCGGAATGCTAACGATTAAGGGAGAGGACGCTTTAGGC AAGGCCAGTTTGAAGGATTTGGGTTTAAGTGCTGGCATGGTGCAATCTTATGAAGCTTCACAAAACACGCTTTTTATGTC TAAAAATTTGCAAAAAGCGAGCGATTCAGCATTCACTTATAACGGGGTGAGCATCACACGCCCCACTAATGAGGTCAATG ATGTGATCAGTGGGGTTAATATCACTTTAGAGCAAACCACAGAGCCTAATAAACCTGCCATTATCAGCGTGAGCAGGGAC AATCAAGCCATTATAGACAGCCTTACTGAATTTGTCAAAGCCTATAATGAGCTTATCCCTAAACTGGATGAAGACACTCG TTATGACGCTGACACTAAAATCGCTGGGATTTTTAACGGCGTGGGCGATATTCGCGCGATTCGTTCTTCTCTTAATAATG TGTTTTCTTATAGCGTGCATACGGATAATGGGGTAGAAAGCTTGATGAAATACGGGCTTAGTTTGGACGATAAAGGCGTG ATGAGTTTAGATGAGGCTAAATTGAGTAGTGCGCTAAATTCTAATCCTAAAGCGACTCAAGATTTTTTCTATGGGAGCGA TAGCAAGGATATGGGGGGCAGAGAGATCCACCAAGAGGGCATTTTTTCTAAATTCAATCAAGTCATCGCCAATCTCATAG ATGGAGGGAACGCTAAATTAAAGATTTATGAAGATTCCCTAGACAGAGACGCTAAAAGCTTAACCAAAGACAAAGAAAAC GCTCAAGAGCTTTTAAAAACCCGCTACAACATCATGGCGGAACGCTTTGCGGCTTATGATAGCCAAATTTCTAAAGCCAA TCAAAAATTCAATTCCGTGCAAATGATGATCGATCAAGCAGCGGCCAAAAAGAATTAA
Upstream 100 bases:
>100_bases AGAGAGATACCCTCTAAAGAAGCCGTGGAGCTTATGCAAAGAATGCGCGATGTGATAGGCATTATCTTTGATAAAAAAGG CTAAAAATTAGAGGTAAAAC
Downstream 100 bases:
>100_bases AAAGAATTAAAAAAAGAGTTATCAATTTTAAAGGATAAAGGAACATTATGCAATACGCTAACGCTTATCAAGCCTACCAG CATAACCGAGTGAGTGTGGA
Product: flagellar capping protein
Products: NA
Alternate protein names: HAP2; Filament cap protein [H]
Number of amino acids: Translated: 685; Mature: 684
Protein sequence:
>685_residues MAIGSLSSLGLGSKVLNYDVIDKLKDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSSLKGPVKTLSDYSTYISRKSNV TGDALSASVGAGVPIQDIKVDVQNLAQGDINELGAKFSSRDDIFSQVDTTLKFYTQNKDYAVDIKAGMTLGDVAQSITDA TNGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDGSGKSEASLNLKGADGSMHEVPIMLE LPESASIKQKNTAIQKAIEQALENDPNFKDLIANGDISIDTLHGGESLIINDRRGGNIEVKGSKAKELGFLQTTTQESDL LKSSRTIKEGKLEGVVSLNGQRLDLSALTKASNTSEENTDAIIQAINSKEGLNAFKNAEGKLVINSKTGMLTIKGEDALG KASLKDLGLSAGMVQSYEASQNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGV MSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVIANLIDGGNAKLKIYEDSLDRDAKSLTKDKEN AQELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN
Sequences:
>Translated_685_residues MAIGSLSSLGLGSKVLNYDVIDKLKDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSSLKGPVKTLSDYSTYISRKSNV TGDALSASVGAGVPIQDIKVDVQNLAQGDINELGAKFSSRDDIFSQVDTTLKFYTQNKDYAVDIKAGMTLGDVAQSITDA TNGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDGSGKSEASLNLKGADGSMHEVPIMLE LPESASIKQKNTAIQKAIEQALENDPNFKDLIANGDISIDTLHGGESLIINDRRGGNIEVKGSKAKELGFLQTTTQESDL LKSSRTIKEGKLEGVVSLNGQRLDLSALTKASNTSEENTDAIIQAINSKEGLNAFKNAEGKLVINSKTGMLTIKGEDALG KASLKDLGLSAGMVQSYEASQNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGV MSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVIANLIDGGNAKLKIYEDSLDRDAKSLTKDKEN AQELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN >Mature_684_residues AIGSLSSLGLGSKVLNYDVIDKLKDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSSLKGPVKTLSDYSTYISRKSNVT GDALSASVGAGVPIQDIKVDVQNLAQGDINELGAKFSSRDDIFSQVDTTLKFYTQNKDYAVDIKAGMTLGDVAQSITDAT NGEVMGIVMKTGGNDPYQLMVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDGSGKSEASLNLKGADGSMHEVPIMLEL PESASIKQKNTAIQKAIEQALENDPNFKDLIANGDISIDTLHGGESLIINDRRGGNIEVKGSKAKELGFLQTTTQESDLL KSSRTIKEGKLEGVVSLNGQRLDLSALTKASNTSEENTDAIIQAINSKEGLNAFKNAEGKLVINSKTGMLTIKGEDALGK ASLKDLGLSAGMVQSYEASQNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDN QAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVHTDNGVESLMKYGLSLDDKGVM SLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVIANLIDGGNAKLKIYEDSLDRDAKSLTKDKENA QELLKTRYNIMAERFAAYDSQISKANQKFNSVQMMIDQAAAKKN
Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the
COG id: COG1345
COG function: function code N; Flagellar capping protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliD family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010809 - InterPro: IPR003481 [H]
Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]
EC number: NA
Molecular weight: Translated: 74049; Mature: 73918
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIGSLSSLGLGSKVLNYDVIDKLKDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSSL CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH KGPVKTLSDYSTYISRKSNVTGDALSASVGAGVPIQDIKVDVQNLAQGDINELGAKFSSR CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCH DDIFSQVDTTLKFYTQNKDYAVDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQL HHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE MVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDGSGKSEASLNLKGADGSMHEVPIMLE EEECCCCCCCCEEEECCHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEE LPESASIKQKNTAIQKAIEQALENDPNFKDLIANGDISIDTLHGGESLIINDRRGGNIEV CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEE KGSKAKELGFLQTTTQESDLLKSSRTIKEGKLEGVVSLNGQRLDLSALTKASNTSEENTD CCCCHHHCCCEEECCCHHHHHHHHCCHHCCCCCEEEEECCCEEEHHHHHHCCCCCCCHHH AIIQAINSKEGLNAFKNAEGKLVINSKTGMLTIKGEDALGKASLKDLGLSAGMVQSYEAS HHHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCHHHHCCCC QNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD CCEEEEECCCCCCCCCCEEECCEEEECCCHHHHHHHCCCEEEEECCCCCCCCEEEEECCC NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVH CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEE TDNGVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEG CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHH IFSKFNQVIANLIDGGNAKLKIYEDSLDRDAKSLTKDKENAQELLKTRYNIMAERFAAYD HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH SQISKANQKFNSVQMMIDQAAAKKN HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AIGSLSSLGLGSKVLNYDVIDKLKDADEKALIAPLDKKMEQNVEKQKALVEIKTLLSSL CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH KGPVKTLSDYSTYISRKSNVTGDALSASVGAGVPIQDIKVDVQNLAQGDINELGAKFSSR CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCH DDIFSQVDTTLKFYTQNKDYAVDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQL HHHHHHHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEE MVNTKNTGEDNRIYFGSHLQSTLTNKNALSLGVDGSGKSEASLNLKGADGSMHEVPIMLE EEECCCCCCCCEEEECCHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEE LPESASIKQKNTAIQKAIEQALENDPNFKDLIANGDISIDTLHGGESLIINDRRGGNIEV CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEE KGSKAKELGFLQTTTQESDLLKSSRTIKEGKLEGVVSLNGQRLDLSALTKASNTSEENTD CCCCHHHCCCEEECCCHHHHHHHHCCHHCCCCCEEEEECCCEEEHHHHHHCCCCCCCHHH AIIQAINSKEGLNAFKNAEGKLVINSKTGMLTIKGEDALGKASLKDLGLSAGMVQSYEAS HHHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCHHHHCCCC QNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD CCEEEEECCCCCCCCCCEEECCEEEECCCHHHHHHHCCCEEEEECCCCCCCCEEEEECCC NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRAIRSSLNNVFSYSVH CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEE TDNGVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYGSDSKDMGGREIHQEG CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHH IFSKFNQVIANLIDGGNAKLKIYEDSLDRDAKSLTKDKENAQELLKTRYNIMAERFAAYD HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH SQISKANQKFNSVQMMIDQAAAKKN HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]