Click here to switch to the map view.

The map label for this gene is comM [H]

Identifier: 188527364

GI number: 188527364

Start: 544243

End: 545763

Strand: Direct

Name: comM [H]

Synonym: HPSH_02855

Alternate gene names: 188527364

Gene position: 544243-545763 (Clockwise)

Preceding gene: 188527363

Following gene: 188527365

Centisome position: 33.83

GC content: 41.35

Gene sequence:

>1521_bases
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAGCACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAGGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGTTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAATAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATCATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Upstream 100 bases:

>100_bases
ATGGCGTGTTATTCGTGGATAAATTGTCCATTTTGAAGCGTAAGAAATTTGAAAAAGAATTAAAAGAATTAAATAAAAAT
CCCAAAAGCAAGTCCTAATC

Downstream 100 bases:

>100_bases
AAGGATTTTTATAAGGGAGAGAAAATGCAAGAATACCACATTCATAATTTGGATTGCCCTGATTGCGCGTCTAAATTAGA
AAGGGATTTAAACAAACTAG

Product: sigma-54 interacting protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNHKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Sequences:

>Translated_506_residues
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNHKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS
>Mature_506_residues
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNHKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Specific function: Induced during competence development. Not needed for DNA uptake. May be involved in a recombination step [H]

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=496, Percent_Identity=36.491935483871, Blast_Score=295, Evalue=4e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001208
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 57166; Mature: 57166

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00676 SIGMA54_INTERACT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFP
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
PLKITINLSPSDLPKSGSHFDLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFP
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
MLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKEALEILQNPEIKADTHTKKLP
HHHHHHHCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
EEEEEECCCEEEECCEEEECHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGE
HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCCC
IALAHNGMLFFDELPHFKKDILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLC
EEEEECCEEEEHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHEEEEEEEEEECCCCCCH
GNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEEGNHKDTPSHSWTSKEMHQLV
HHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHH
LLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TIADLNACENIEKSHMLKALSFRKIS
HHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFP
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
PLKITINLSPSDLPKSGSHFDLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFP
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
MLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKEALEILQNPEIKADTHTKKLP
HHHHHHHCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FKTIELNDKEYYFSDAYALDFKEVKGQVVAKEAALIASAGFHNLILEGSPGCGKSMIINR
EEEEEECCCEEEECCEEEECHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGE
HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCCC
IALAHNGMLFFDELPHFKKDILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLC
EEEEECCEEEEHHCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHEEEEEEEEEECCCCCCH
GNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEEGNHKDTPSHSWTSKEMHQLV
HHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHH
LLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TIADLNACENIEKSHMLKALSFRKIS
HHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 9457884 [H]