| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527353
Identifier: 188527353
GI number: 188527353
Start: 536665
End: 537411
Strand: Direct
Name: 188527353
Synonym: HPSH_02800
Alternate gene names: NA
Gene position: 536665-537411 (Clockwise)
Preceding gene: 188527352
Following gene: 188527354
Centisome position: 33.36
GC content: 40.96
Gene sequence:
>747_bases ATGGTTTTGGTTATTATTTGGGGGTTAGGCTGTAATTTTTTAAACGCTAACAGCGTTCAATTAGAAGAAACGCTCAGGCG AAGTCCTAAAAATCTTATTTGGCAACACTTTAAAAAGAGGTTTAAAAAGAGCAACACGATCCCTTATGCCCCAAATAGCC GTTGGAAATATTTAGGCACGAGTGTTGGGATTTTAGGCGTGTCTTTGGTGATAGGGATTGTGGGGTTGTATCTCATGCCA GAGAGCGTAACGAATTGGGATAGAGAAAAGTTTGGGATCAAAAGTTGGTTTGAAAATGTCCGCATGGGGCCAAAACTGGA CAATGATAGTTTTATTTTCAATGAAATTTTGCACCCTTATTTTGGGGCTATGTATTATATGCAACCGCGCATGGCTGGGT TTGGTTGGATGGCATCAGCGTTTTTTTCTTTTATCACTTCCACGCTTTTTTGGGAATATGGCTTGGAAGCGTTTGTGGAA GTGCCCAGCTGGCAGGATCTAGTGATCACGCCTTTATTAGGCTCCATTTTAGGAGAAGGGTTTTATCAGCTCACGCGCTA TATCCAACGCAACGAAGGCAAGCTTTTTGGCTCTTTATTTTTAGGGCGTTTGGTTATCGCTCTTATGGATCCTATCGGTT TTATCATTAGGGATTTAGGGCTTGGGGAAGCTTTAGGGATTCATAATAAACATGAAATCCGTTCTAGCTTAGGCCCCAAT GGTTTGAATTTGACTTACAAATTTTAA
Upstream 100 bases:
>100_bases CAACCTGATGAGAGTAATAATAGAGTTTATGCTGATTTCATTAAAAACATTCCTAAAAATATTATTGAAAATATTCTTAA AAACATTCCAAAAGATTTGG
Downstream 100 bases:
>100_bases AGGAGTAACCCGTATCAAGCGATTTTAAAAACATTTTTATCGGCACAAATTATAAAGAGTTTTGATAGAATACCTTTTTT TAAAAGATGCGTTTTAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MVLVIIWGLGCNFLNANSVQLEETLRRSPKNLIWQHFKKRFKKSNTIPYAPNSRWKYLGTSVGILGVSLVIGIVGLYLMP ESVTNWDREKFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFGWMASAFFSFITSTLFWEYGLEAFVE VPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIHNKHEIRSSLGPN GLNLTYKF
Sequences:
>Translated_248_residues MVLVIIWGLGCNFLNANSVQLEETLRRSPKNLIWQHFKKRFKKSNTIPYAPNSRWKYLGTSVGILGVSLVIGIVGLYLMP ESVTNWDREKFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFGWMASAFFSFITSTLFWEYGLEAFVE VPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIHNKHEIRSSLGPN GLNLTYKF >Mature_248_residues MVLVIIWGLGCNFLNANSVQLEETLRRSPKNLIWQHFKKRFKKSNTIPYAPNSRWKYLGTSVGILGVSLVIGIVGLYLMP ESVTNWDREKFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFGWMASAFFSFITSTLFWEYGLEAFVE VPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIHNKHEIRSSLGPN GLNLTYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28370; Mature: 28370
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLVIIWGLGCNFLNANSVQLEETLRRSPKNLIWQHFKKRFKKSNTIPYAPNSRWKYLGT CEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCH SVGILGVSLVIGIVGLYLMPESVTNWDREKFGIKSWFENVRMGPKLDNDSFIFNEILHPY HHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FGAMYYMQPRMAGFGWMASAFFSFITSTLFWEYGLEAFVEVPSWQDLVITPLLGSILGEG HHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH FYQLTRYIQRNEGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIHNKHEIRSSLGPN HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCC GLNLTYKF CCEEEEEC >Mature Secondary Structure MVLVIIWGLGCNFLNANSVQLEETLRRSPKNLIWQHFKKRFKKSNTIPYAPNSRWKYLGT CEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCH SVGILGVSLVIGIVGLYLMPESVTNWDREKFGIKSWFENVRMGPKLDNDSFIFNEILHPY HHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FGAMYYMQPRMAGFGWMASAFFSFITSTLFWEYGLEAFVEVPSWQDLVITPLLGSILGEG HHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH FYQLTRYIQRNEGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIHNKHEIRSSLGPN HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCC GLNLTYKF CCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA