| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527252
Identifier: 188527252
GI number: 188527252
Start: 441472
End: 442959
Strand: Reverse
Name: 188527252
Synonym: HPSH_02295
Alternate gene names: NA
Gene position: 442959-441472 (Counterclockwise)
Preceding gene: 188527253
Following gene: 188527251
Centisome position: 27.54
GC content: 36.83
Gene sequence:
>1488_bases ATGAGCGTTTTGAAATTGCATGTAAAAGTCTTTCGTTTTGAAACCAACAAAGATTACAACCCTGCTTATGAGTCTTATTT TTTAGAATACCAAGAAGATCAGTACCTTTTGGATCTTTTAAAACAACTCAAAGGCGTGAGCTATAATGAAAATATCGCGC TTAAAATCAACCAAATTGCGGTGTTTGAAGACGCTAAAGTGAGCGATTTGGTGGCGTTTTTTTCTAAAGAATGGGTGCTA GATCCCCTATCCAAACGATACGCTTTAAAAGATTTGGTGATTGATGAAAAGGCGGTTTTAAAAAACTATGAAGATTTTTT CAAACAAGTCCCCTACATCACTAAAGGCGAAAAAGAAGAATTAGAAAAGTTTATCCAAATCAATTTTATCAACCCCCAAA CAAACCCTAAATATCTGGGCGATGGCTTTTTCTTGTATGTTAAATGGTTGATGAAGCGCTACCCCACAGAGCGCAACCGG TTATTAGAGATGATTTCTCAGCCTGAAAGCGGCGTGATGAATTTTTTAAGCGTGGCGCATTATCTCTATAAAAACGATGA CAACATTGACCATGAAATCTATGAATTGCAAGAAATCCTAACCAATTCCAAAATCAAGCCATGGAAAGATTTTTCTAAAA ACCTTTTAAGCCTTTTTCAATACAATTCTAACCCCCCTAAAACGCCTAACCCCCCTAAAACTTGCGCGCTCTTTAACGCT TATGCGAAGCATTTAAACGCGCAATCGCTTCTAAAAAGCGCTAAGCTCTATTTAGAAAAAATGGGGCAAAAAACCATTGA TCTGCCTTTTTGTTATGATGGAGGCTATTATGGGAAGATTATAAGCACGCATGATTTCCTCACCGCTTGTGCGTATAATC TGGCTCTAGCCAAAGCCAATGGCGTTTCGCTCATTTTTTGCGAAGAAGATGCGTATTTGAATATCTTGCATGCTAAAGAA ATTTTAGACAACAACCCTGAAATTATCGACTCCATTAATGAAAAATTGAAAAAATACCAGCTTGTTTATGAAAAAGGCGT TGAGATAGTCTATCTTAATGAGTGGGTTAATGAGTTTTTGGCATGGGAATTGAAAAGCCCTTTTGATGCGTTTTTAGGGG CTGAATTTTCTCGCATCAAACAAAGCGATCATTTTTTCAATAAAATCCATTTAAAAGCCCCCCATTTTTTAGAGTCCTTT CAAAATTACGCCCCCCTTTTAGAAGTCAATGAAATAAGTGGCTTACTCCAGTGTGCGCATTTACGCTATTTAGGGATTGA TTTGGGGGCGGATTTTTTAATCGTGCATTCTTTAGGGCTTTTTCACGCTTTTGAAAATTTAAGCTTAAAAGCTTCAAAGA TTTATAAAAGAGATAATGACAACACCCCCACTTTATTTTTACCTCAAATCGCGCTAATAGCTATGGGGGAAAAAAACATG CAAGCTTTAGGGCTTGATGTGCATTATCATAAGGTTACTTTCATTTAA
Upstream 100 bases:
>100_bases GGGAGTTTAAAGAATGGTTGGATTCTAAAGAGGCCCTTTTTTCCAATTCCAAAAACCGTGCGATTTTAGAAAATCTGCAC AAAAGCTAAAGGACTGATTG
Downstream 100 bases:
>100_bases GATGAACGCTTTTTTAAAACTTGCGCTCGCTTCTTTGATGGGGGGGCTTTGGTATGCTTTCAATGGCGAAGGTTCTGAGA TTGTCGCTATAGGGATTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVL DPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNR LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKE ILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESF QNYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM QALGLDVHYHKVTFI
Sequences:
>Translated_495_residues MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVL DPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNR LLEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKE ILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESF QNYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM QALGLDVHYHKVTFI >Mature_494_residues SVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIAVFEDAKVSDLVAFFSKEWVLD PLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEELEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRL LEMISQPESGVMNFLSVAHYLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNAY AKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKANGVSLIFCEEDAYLNILHAKEI LDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFLAWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQ NYAPLLEVNEISGLLQCAHLRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNMQ ALGLDVHYHKVTFI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57543; Mature: 57412
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA CCCEEEEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEE EECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVAH HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKAN HHHHCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCEEEEECHHHHHHHHHHHHHEEECC GVSLIFCEEDAYLNILHAKEILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFL CEEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH AWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQNYAPLLEVNEISGLLQCAH HHHCCCHHHHHHCCHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCEEHHHHHHHHHHHH LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM HHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCC QALGLDVHYHKVTFI EEEEEEEEEEEEEEC >Mature Secondary Structure SVLKLHVKVFRFETNKDYNPAYESYFLEYQEDQYLLDLLKQLKGVSYNENIALKINQIA CCEEEEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE VFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLVIDEKAVLKNYEDFFKQVPYITKGEKEE EECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHH LEKFIQINFINPQTNPKYLGDGFFLYVKWLMKRYPTERNRLLEMISQPESGVMNFLSVAH HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH YLYKNDDNIDHEIYELQEILTNSKIKPWKDFSKNLLSLFQYNSNPPKTPNPPKTCALFNA HHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH YAKHLNAQSLLKSAKLYLEKMGQKTIDLPFCYDGGYYGKIISTHDFLTACAYNLALAKAN HHHHCCHHHHHHHHHHHHHHHCCCEECCEEEECCCCEEEEECHHHHHHHHHHHHHEEECC GVSLIFCEEDAYLNILHAKEILDNNPEIIDSINEKLKKYQLVYEKGVEIVYLNEWVNEFL CEEEEEECCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH AWELKSPFDAFLGAEFSRIKQSDHFFNKIHLKAPHFLESFQNYAPLLEVNEISGLLQCAH HHHCCCHHHHHHCCHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCCEEHHHHHHHHHHHH LRYLGIDLGADFLIVHSLGLFHAFENLSLKASKIYKRDNDNTPTLFLPQIALIAMGEKNM HHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCCEEEEEECCCCC QALGLDVHYHKVTFI EEEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA