| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is flgL
Identifier: 188527101
GI number: 188527101
Start: 297020
End: 299506
Strand: Reverse
Name: flgL
Synonym: HPSH_01530
Alternate gene names: 188527101
Gene position: 299506-297020 (Counterclockwise)
Preceding gene: 188527116
Following gene: 188527087
Centisome position: 18.62
GC content: 39.77
Gene sequence:
>2487_bases ATGCGCGTTACCTTTGGCTCAAAATACAACCAAATGAATAACTATCAAAACGCTTTACAAAATAAAATCAACGACGCTAA CACGCAGATTGCTTCAGGGCTAAAAATCCGTTATGGCTATCAAAACAGCGACATTAACAACCAGAATTTAAAATTCCAAT ACGAAGAAAACACCTTAGATCAAGGCATTGATGTGGCTCAAAACGCTTACACTTCAACGCTCAATACCGACAAAGCCTTG CAAGAATTTTCTAAAACGATGGAGACTTTTAAAACCAAGCTCATCCAATCCGCTAACGATGTGCATTCAGAAACTTCTCG CGTCGCTATCGCTAACGATTTGGAACGCTTGAGGGAGCATATGATGAATGTTGCTAACACCTCTATAGGGGGGGAATTTT TATTTGGGGGCAGTAAGGTGGATAGACCCCCCATTGATAGCGAGGGGAAATACCATGGCAATGGCGAAGATTTAAACGCG CTCATCAGCTCTGATAACCTTGTGCCTTATAATATCAGTGGGCAAGATTTGTTTTTAGGCGCGGATAAAGACAAGCACAA ACTCATCACCACCAACATTAAATTACTCAATCAAAACAAGCTCCACCCTGATGTGATGGACGCTTTAGAGCATTCTTCAT TACCTGAAGAAGTTTTTATCAAACCCAGCGATACCTTGCGAGAACTCATCGGCGATAACGATAAAGACCCCACCAATGAC CCTAAAGAGTTTTTTTATTTGCAAGGCATTAGGCCTGATGGCTCCAGTTTTAAAGAAAAATTCGCGCTGGATAAAGCCTA CCAGAACAAAGAAAGCGCAACTAAAGTGAGCGATTTGCTGGATAAAATCGGTCATGCTTACGGGAACACTTCGCAAAATA AAGTCGTGGATGTGAGTTTGAATAATTGGGGGCAAATTGAGATCAAAAACCTAACGCCTGGCAGTGAGAATTTGGATTTT CATTTGATTTCTAGCGATGGGGATTTTGATGATTTAGACGCTTTGCGATCGAGCGCTAAAAGGGTTACTGAATATGTCAA AAGCGCGTTTGTAACGGATAGGAGCTTGAGCCAGGTTAAAGCGGTGCCCAACATGTATAACCCTAGAGCACTTGAAATCC CTAGCGTGTTTGTAACTAAAGGCAATGTTTTAGCCAACAAAAACACTAAATTGAGCGAGATTTTTGGCGATAGCGTGGAA ACTTTAAAAATCAATGCCAGCCGTTTGGACGATACAAGCGCTATTAAAATCCCAAACCTCCCTGTTTATTTGGATATTCC CATTCTTTTAGATGTGAAAAATTCTACGATTAAAGATTTGAAAGACGCGATTAAAGAACGCTTTAATAATGAAGTGGATG TGGAAATTGAAACAAACGGGCGTTTGAGGATTATTGACAATTCTTCTAACCAATCGCCTATTTCTTTTGCTTTAAGCGCC CTAGATCAAAAAGGGCTAGAAGTGGCCGGCATTCCTACTAATAACGCGAGCGAATACCAAAAAACCTATTTCAATAAAGA AGGGGCAAAATTAGAAAGCAATGTGGCTCAAATCGCTCAAAATGGCGCGGCTAATGGCTCTACTAAACTGAGTGAAGTCG CTAATGGGAGTTTAGAAAATAGCGTTTTTAACATGAAATTAAACGATGTGAATGGTTCGTTTTTAGAAGCGCAAATGATC TTGGATAATAATGGGGCTTTTTTAAGTTTGCCTAATGGCATTAAAATCCCGCTTTATGACCCCACAAGCGCTGATATTCA AGCTTCTAAACCCAATGAAGTAACTTACAGGCAACTTATGGATGCGATGAGTATCGCGCTCAATTACAGCAATACTGACC CCGCCATCTACCAACAAATCAGCGATAACCCCACTTCAAAAGAAAGCAAGGAGCACTTTATTGAATTGTTAAAACAAGCT AAAGACAACCTTTCTGTTAATTTGAATGAAGAAGGAAAAGTCATTATCCAAGATAACATGCACTCAAACACCAAAATGCA GTTCATGCTTTTTGATAAAGACGCGAATGATTTTTCTCAAAACGCCTTGCACAGCGACAAACCAAGCCTTAAATTAAACG CTAATAACGCTTTAATTATTGACAAGCCCAGCGTGAATTTTTTTGATCAATTAGAAAATACCATCACTTCGGTAAGAAAA GGGATTTATCGCCCGGACGCTTTAGGGGATACTTATTCTAGCGACATGCGTAATTTAGGCATTCAAAACGGTATCACCCT TATAGATCACTTGAGCGATCACATAGAAAAAATGATCGCTAAAAACGGCGCTCATGGTAAGGCGTTTGAAAACATTATCA GGCGTAATGAAGTTTTAAAAACGCAAGTTCAAAGCATTCGTGGGGAAACGACCGGCACGGATATGGCAGAAACTTACAAT AAATTTTCCAATCTCACTAACAACTATAACGCTGTTTTGGCTTCCACGAACAAAATCAATAATCTGTCTTTAACGAAATA TTTGTAG
Upstream 100 bases:
>100_bases ATAACCCCATTATTGCCCCACTCAAACCACTCAAAATTGTTATTAACTTGTTTTGGAATACTTTTAGCTTGTTTGTTAAA AAACCAATAAGGATTTGATC
Downstream 100 bases:
>100_bases TCTTTTGGTGGTTTTTAAGCGTTCTAAAAAGAGATATTAAAACGCTTTTAAGCTTCTCTAAAGCCCCCCCCCTTTTTGCC CCTTATTTCGTGGGCAAATC
Product: flagellar hook-associated protein FlgL
Products: NA
Alternate protein names: HAP3 [H]
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAQNAYTSTLNTDKAL QEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGIRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSAKRVTEYVKSAFVTDRSLSQVKAVPNMYNPRALEIPSVFVTKGNVLANKNTKLSEIFGDSVE TLKINASRLDDTSAIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSNQSPISFALSA LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVANGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKEHFIELLKQA KDNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL
Sequences:
>Translated_828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAQNAYTSTLNTDKAL QEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGIRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSAKRVTEYVKSAFVTDRSLSQVKAVPNMYNPRALEIPSVFVTKGNVLANKNTKLSEIFGDSVE TLKINASRLDDTSAIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSNQSPISFALSA LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVANGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKEHFIELLKQA KDNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL >Mature_828_residues MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLDQGIDVAQNAYTSTLNTDKAL QEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERLREHMMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNA LISSDNLVPYNISGQDLFLGADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND PKEFFYLQGIRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDF HLISSDGDFDDLDALRSSAKRVTEYVKSAFVTDRSLSQVKAVPNMYNPRALEIPSVFVTKGNVLANKNTKLSEIFGDSVE TLKINASRLDDTSAIKIPNLPVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSNQSPISFALSA LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVANGSLENSVFNMKLNDVNGSFLEAQMI LDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLMDAMSIALNYSNTDPAIYQQISDNPTSKESKEHFIELLKQA KDNLSVNLNEEGKVIIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLKTQVQSIRGETTGTDMAETYN KFSNLTNNYNAVLASTNKINNLSLTKYL
Specific function: Unknown
COG id: COG1344
COG function: function code N; Flagellin and related hook-associated proteins
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial flagellin family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013384 - InterPro: IPR001029 [H]
Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]
EC number: NA
Molecular weight: Translated: 92110; Mature: 92110
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00287 CYSTATIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLD CEEECCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCHH QGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERLREH HCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNALISSDNLVPYNISGQDLFLG HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCEEEEECCCCEEEEE ADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHEEECCHHHHHHHHCCCCCCCCCC PKEFFYLQGIRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIGHAYGNTSQNKVVDVSL CCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE NNWGQIEIKNLTPGSENLDFHLISSDGDFDDLDALRSSAKRVTEYVKSAFVTDRSLSQVK CCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH AVPNMYNPRALEIPSVFVTKGNVLANKNTKLSEIFGDSVETLKINASRLDDTSAIKIPNL HCCCCCCCCEEECCEEEEECCCEEECCCCHHHHHHCCCCEEEEEEHHHCCCCCEEECCCC PVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSNQSPISFALSA CEEEECEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHH LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVANGSLEN HHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC SVFNMKLNDVNGSFLEAQMILDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLM CEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCEEEEECCCCCCEECCCCCCHHHHHHH DAMSIALNYSNTDPAIYQQISDNPTSKESKEHFIELLKQAKDNLSVNLNEEGKVIIQDNM HHHHHEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCC HSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK CCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHH GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLK CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TQVQSIRGETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL HHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCC >Mature Secondary Structure MRVTFGSKYNQMNNYQNALQNKINDANTQIASGLKIRYGYQNSDINNQNLKFQYEENTLD CEEECCCCHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCHH QGIDVAQNAYTSTLNTDKALQEFSKTMETFKTKLIQSANDVHSETSRVAIANDLERLREH HCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMNVANTSIGGEFLFGGSKVDRPPIDSEGKYHGNGEDLNALISSDNLVPYNISGQDLFLG HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHEECCCCEEEEECCCCEEEEE ADKDKHKLITTNIKLLNQNKLHPDVMDALEHSSLPEEVFIKPSDTLRELIGDNDKDPTND CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCHHEEECCHHHHHHHHCCCCCCCCCC PKEFFYLQGIRPDGSSFKEKFALDKAYQNKESATKVSDLLDKIGHAYGNTSQNKVVDVSL CCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE NNWGQIEIKNLTPGSENLDFHLISSDGDFDDLDALRSSAKRVTEYVKSAFVTDRSLSQVK CCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH AVPNMYNPRALEIPSVFVTKGNVLANKNTKLSEIFGDSVETLKINASRLDDTSAIKIPNL HCCCCCCCCEEECCEEEEECCCEEECCCCHHHHHHCCCCEEEEEEHHHCCCCCEEECCCC PVYLDIPILLDVKNSTIKDLKDAIKERFNNEVDVEIETNGRLRIIDNSSNQSPISFALSA CEEEECEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHH LDQKGLEVAGIPTNNASEYQKTYFNKEGAKLESNVAQIAQNGAANGSTKLSEVANGSLEN HHHCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCC SVFNMKLNDVNGSFLEAQMILDNNGAFLSLPNGIKIPLYDPTSADIQASKPNEVTYRQLM CEEEEEEECCCCCEEEEEEEEECCCCEEECCCCCEEEEECCCCCCEECCCCCCHHHHHHH DAMSIALNYSNTDPAIYQQISDNPTSKESKEHFIELLKQAKDNLSVNLNEEGKVIIQDNM HHHHHEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCC HSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALIIDKPSVNFFDQLENTITSVRK CCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHH GIYRPDALGDTYSSDMRNLGIQNGITLIDHLSDHIEKMIAKNGAHGKAFENIIRRNEVLK CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TQVQSIRGETTGTDMAETYNKFSNLTNNYNAVLASTNKINNLSLTKYL HHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]