| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188526961
Identifier: 188526961
GI number: 188526961
Start: 150548
End: 151144
Strand: Direct
Name: 188526961
Synonym: HPSH_00790
Alternate gene names: NA
Gene position: 150548-151144 (Clockwise)
Preceding gene: 188526960
Following gene: 188526962
Centisome position: 9.36
GC content: 38.53
Gene sequence:
>597_bases GTGTTAAAAAAGATGGTAGGTTTGGTGGTGGTTTTAAGCGTTTTATTAGCCAGAGATAACCCTTTTGAGCCTGAAATCAA TTCCAAGAATTTGCAAGGGGGCTTTAATGGGATCTATGATAGTTATTTTAAAGAAATCCATGTGGATTTGCCCACGAGCG CTAGGATTTTAAAACAAATCACGCTCACTTACCAGGATATTGATGGCTCTATCCATTCTAAAGTCGTGGGCATTGATAAA AGCATTGATTGGCATTACCCCTTAAAGCTTTCCCAACACCCCCTTAATCCAGCCGCTTTTGAAAAACGCTACCAGATCCA AGATTTTGATTTTTCCATGGCAAACAACACGATGATTTTGCGATCCCCTTATAAAATTTTGCGCTCTTTTGTGCTGGTCA ATCCTTATAGAATCGTGTTGGACACGCAAAAAGGCCCTTTGGATATTTATCAAAATAGGGATTTAAACCAGAAGTTTTTT TCTCAAATTAAAGTCGGCACGCACAAAGATTATTACCGCATCACGCTCATTTTAGACGGGAAATACCGCTATCTTTTGGA AGAAAAAAACGGGGCGTATGAATTAAAATTGGAATAA
Upstream 100 bases:
>100_bases ACAAGAAATCACCGAATTGCAAAGCAAGAATGTGCGTTTGCAAAAGCGTTTGTTTGAGTTGAGGGAATTACGGCCTAGAG ATTAGTTTGAAGGAATGATC
Downstream 100 bases:
>100_bases AAGCATGCGGCATTTGGTTTTAATCGGTTTTATGGGGAGCGGTAAAAGCTCCTTAGCGCAAGAATTGGGGTTGGCTTTGA AATTAGAAGTGTTGGATACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGIDK SIDWHYPLKLSQHPLNPAAFEKRYQIQDFDFSMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFF SQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLE
Sequences:
>Translated_198_residues MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGIDK SIDWHYPLKLSQHPLNPAAFEKRYQIQDFDFSMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFF SQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLE >Mature_198_residues MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGIDK SIDWHYPLKLSQHPLNPAAFEKRYQIQDFDFSMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFF SQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23079; Mature: 23079
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQI CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHH TLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHPLNPAAFEKRYQIQDFDFSMANNTMIL HHEEECCCCCHHHEEEECCCCCCCCCCCEECCCCCCHHHHHHCCEECCCCEEECCCEEEE RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLILDG ECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEECC KYRYLLEEKNGAYELKLE CEEEEEECCCCEEEEEEC >Mature Secondary Structure MLKKMVGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQI CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHH TLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHPLNPAAFEKRYQIQDFDFSMANNTMIL HHEEECCCCCHHHEEEECCCCCCCCCCCEECCCCCCHHHHHHCCEECCCCEEECCCEEEE RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLILDG ECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEECC KYRYLLEEKNGAYELKLE CEEEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA