| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is aroK
Identifier: 188526962
GI number: 188526962
Start: 151149
End: 151637
Strand: Direct
Name: aroK
Synonym: HPSH_00795
Alternate gene names: 188526962
Gene position: 151149-151637 (Clockwise)
Preceding gene: 188526961
Following gene: 188526963
Centisome position: 9.4
GC content: 39.06
Gene sequence:
>489_bases ATGCGGCATTTGGTTTTAATCGGTTTTATGGGGAGCGGTAAAAGCTCCTTAGCGCAAGAATTGGGGTTGGCTTTGAAATT AGAAGTGTTGGATACGGATATGATCATTAGCGAGAGGGTGGGCTTGAGCGTGAGAGGGATTTTTGAAGAGCTTGGCGAAG ACAATTTCAGGATGTTTGAAAAAAATTTGATTGATGAATTAAAAACGCTCAAAACCCCCCATATTATTTCTACCGGTGGG GGCATTGTGATGCATGATAACCTTAAGGGTTTAGGCACAACTTTTTATCTCAAAATGGATTTTGAGACCTTGATTAAGCG TTTGAATCAAAAAGAAAGGGAAAAACGCCCCCTTTTGAATGATCTCACTCAAGCCAAAGAGCTTTTTGAAAAACGCCAAG TCCTCTATGAAAAAAACGCCTCTTTTATCATTGATGCAAGGGGTGGTTTAAATAATTCTTTAAAACAAGTGCTACAATTC ATCGCATAA
Upstream 100 bases:
>100_bases CACAAAGATTATTACCGCATCACGCTCATTTTAGACGGGAAATACCGCTATCTTTTGGAAGAAAAAAACGGGGCGTATGA ATTAAAATTGGAATAAAAGC
Downstream 100 bases:
>100_bases TTTTTTTTAAAGGCCTTTTGATGTTGAGTAGAGACATTGTCCAATATTCCAAGATTCGCACCGAGCTATACGCTTATCTT ACCTATTTGTTTTCGCACAA
Product: shikimate kinase
Products: NA
Alternate protein names: SK
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFEKNLIDELKTLKTPHIISTGG GIVMHDNLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNDLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQF IA
Sequences:
>Translated_162_residues MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFEKNLIDELKTLKTPHIISTGG GIVMHDNLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNDLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQF IA >Mature_162_residues MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFEKNLIDELKTLKTPHIISTGG GIVMHDNLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNDLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQF IA
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family
Homologues:
Organism=Escherichia coli, GI87082255, Length=151, Percent_Identity=35.7615894039735, Blast_Score=79, Evalue=2e-16,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): AROK_HELPS (B2URY7)
Other databases:
- EMBL: CP001072 - RefSeq: YP_001909649.1 - ProteinModelPortal: B2URY7 - GeneID: 6296222 - GenomeReviews: CP001072_GR - KEGG: hps:HPSH_00795 - HOGENOM: HBG335815 - OMA: MIISERV - ProtClustDB: PRK00131 - GO: GO:0005737 - HAMAP: MF_00109 - InterPro: IPR000623 - InterPro: IPR023000 - PRINTS: PR01100
Pfam domain/function: PF01202 SKI
EC number: =2.7.1.71
Molecular weight: Translated: 18397; Mature: 18397
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: PS01128 SHIKIMATE_KINASE
Important sites: BINDING 33-33 BINDING 57-57 BINDING 80-80 BINDING 116-116 BINDING 132-132
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFE CCEEEEEEECCCCHHHHHHHHCCEEEEEECCCHHHHHHHCCCHHHHHHHHHCCCHHHHHH KNLIDELKTLKTPHIISTGGGIVMHDNLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN HHHHHHHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCHHH DLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQFIA HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC >Mature Secondary Structure MRHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFE CCEEEEEEECCCCHHHHHHHHCCEEEEEECCCHHHHHHHCCCHHHHHHHHHCCCHHHHHH KNLIDELKTLKTPHIISTGGGIVMHDNLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN HHHHHHHHHHCCCCEEECCCCEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCHHH DLTQAKELFEKRQVLYEKNASFIIDARGGLNNSLKQVLQFIA HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA