Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188526871

Identifier: 188526871

GI number: 188526871

Start: 57058

End: 57408

Strand: Direct

Name: 188526871

Synonym: HPSH_00305

Alternate gene names: NA

Gene position: 57058-57408 (Clockwise)

Preceding gene: 188526870

Following gene: 188526882

Centisome position: 3.55

GC content: 35.04

Gene sequence:

>351_bases
ATGTTTTCTCATAAGGTTTATTTGGAGGGTTGCACCCTTGAATTAAGAAAGATTTGCGATGATTTTGCAGAAAATGCCAT
GCAAGATGATTTAGGGCAGAAAATCAGAGATGAGGTGTTAGAGGACATGCTAAAAATCGCGCATGATTTAGAAAATTTAG
AGCAAGACACTCAATACCAAAGAAGAAGAATTGATGAGCAAATTGAAGAAGCCAAGAGTTTGATGAAGAAAATTGATATG
AATTTCCACTCACAGAGCGAAATTGATAAGCTTATGCGTGAAGCTAAAGAGCATGAAAAAGAAGCCAATAGACGCTATGA
TGAATACTTAAAATCTAAGGATAAAGAATGA

Upstream 100 bases:

>100_bases
GCTAGTGGTGTGGCGCTGTTTTTAGACACTGATGATGGCTCAAAACATGCGCTGTTGCACCTTAAAATGTTTTTAAAAAA
ACTAGAATCAAGGGGTTAAA

Downstream 100 bases:

>100_bases
TTGGAATCAATACCTTGTTGCAAAAACTGGATGATGCCCTAGATAAAGTTGTCCATCAAAAAGAACCAAAGAGTTTTCTC
GATCCGATCGTTTCAGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM
NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE

Sequences:

>Translated_116_residues
MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM
NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE
>Mature_116_residues
MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQRRRIDEQIEEAKSLMKKIDM
NFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14028; Mature: 14028

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRIDEQIEEAKSLMKKIDMNFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFSHKVYLEGCTLELRKICDDFAENAMQDDLGQKIRDEVLEDMLKIAHDLENLEQDTQYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRIDEQIEEAKSLMKKIDMNFHSQSEIDKLMREAKEHEKEANRRYDEYLKSKDKE
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA