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The map label for this gene is rpsT

Identifier: 188526882

GI number: 188526882

Start: 68009

End: 68278

Strand: Direct

Name: rpsT

Synonym: HPSH_00370

Alternate gene names: 188526882

Gene position: 68009-68278 (Clockwise)

Preceding gene: 188526871

Following gene: 188526883

Centisome position: 4.23

GC content: 39.26

Gene sequence:

>270_bases
ATGGCAAATCATAAGTCCGCAGAAAAGCGAATCAGACAGACCATTAAAAGAACCGAACGCAACAGGTTCTATAAAACTAA
AGTTAAAAATATCATTAAGGCCGTGCGTGAAGCGGTCGCTGTCAATGATGTAGCAAAAGCTCAAGAGCGTTTGAAAATCG
CTAATAAAGAGTTGCATAAATTTGTCAGCAAGGGGATTTTAAAGAAAAACACCGCTTCTAGGAAAGTTTCAAGGCTTAAC
GCTTCAGTGAAAAAAATCGCTCTCGCTTAG

Upstream 100 bases:

>100_bases
AAAATTTTCATCGTTATAAAATACCTTTTAAACTATTTTTAATCAATTTTTAGATAGGATTATGCCAAATTTTACATTAC
AAAGGGATTAAAATAAGGCT

Downstream 100 bases:

>100_bases
TTTTTGAGGCGTTTTTAACTTCTTTAAGCTCAATGATGGATTTTATTATTGGGCTTCTTTTTGCGTTTTTTAGATTGTTG
CATCTTTTATCCACATCTTT

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLN
ASVKKIALA

Sequences:

>Translated_89_residues
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLN
ASVKKIALA
>Mature_88_residues
ANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNA
SVKKIALA

Specific function: Binds directly to 16S ribosomal RNA [H]

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002583
- ProDom:   PD004231 [H]

Pfam domain/function: PF01649 Ribosomal_S20p [H]

EC number: NA

Molecular weight: Translated: 10182; Mature: 10051

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSKGILKKNTASRKVSRLNASVKKIALA
HHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAVNDVAKAQERLKIANKELHK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSKGILKKNTASRKVSRLNASVKKIALA
HHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA