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The map label for this gene is yecD [H]

Identifier: 187930663

GI number: 187930663

Start: 3771205

End: 3771804

Strand: Reverse

Name: yecD [H]

Synonym: Rpic_3599

Alternate gene names: 187930663

Gene position: 3771804-3771205 (Counterclockwise)

Preceding gene: 187930664

Following gene: 187930661

Centisome position: 95.67

GC content: 68.5

Gene sequence:

>600_bases
ATGTCTGAACCGCTGCAAACCCTGTCTGCCTTGTCTGCGAAAACCACCGCGCTGGTGCTGATCGACCTGCAACGCGGCAT
CCTGCCGTTTGCCCAGGGGCCGCACTCGGCCGAGCAGGTATTGGGCGCATCCGCCAGGCTCGCCAGGTGCTTTCGCGAGC
TGGCTGCGCCCGTGGTGCTGGTGCGCGTGGGGTGGGCGCCCGACTACGCCGATGCGCCGCGCCAGCCCGTCGACCGGCCC
GCGCCCACACAGCCGGGCGGTCTGCCGCCGCAATGGTGGGAACAGCCCGCCGAGCTGGAAGTCGCACCCACCGACATCCA
GATCACCAAGCGCCAATGGGGCGCGTTCTACGGCACCGAGCTGGATCTGCAGTTGCGCCGTCGCGGCATCACCACCATCG
TGCTGGGCGGTATCTCGACGCATGTAGGCGTCGAATCGACCGCGCGCGCCGCGTGGGAACACGGCTACGCGCTGGTGCTG
GCCGAAGATGCGATGAGCTCGAACGATGCGGCCATGCATCGGTCGTCGGTGGAGAACGTATTCCCGCGACTGGGCCGCGT
GCGCGACACCGGCACCATCCTCTCGGCCTTGACGGCCTGA

Upstream 100 bases:

>100_bases
CGGAGGGCACGCTCAAGACGCAGGACGGCACATTGCTCGCGCACGCCACGGCAACGTGTGTCATCCGCCGTCCGTGATTC
CGATTGACCTGGAGCACCTG

Downstream 100 bases:

>100_bases
GCTTTCAGGCCCCGTCCCCGACGGGCACGTACAGCACCATGCGCAGGCGCGGGTCTTCCATTACCGGCAGGCCGATGTAG
TCGTAGCGGACGACCTGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSEPLQTLSALSAKTTALVLIDLQRGILPFAQGPHSAEQVLGASARLARCFRELAAPVVLVRVGWAPDYADAPRQPVDRP
APTQPGGLPPQWWEQPAELEVAPTDIQITKRQWGAFYGTELDLQLRRRGITTIVLGGISTHVGVESTARAAWEHGYALVL
AEDAMSSNDAAMHRSSVENVFPRLGRVRDTGTILSALTA

Sequences:

>Translated_199_residues
MSEPLQTLSALSAKTTALVLIDLQRGILPFAQGPHSAEQVLGASARLARCFRELAAPVVLVRVGWAPDYADAPRQPVDRP
APTQPGGLPPQWWEQPAELEVAPTDIQITKRQWGAFYGTELDLQLRRRGITTIVLGGISTHVGVESTARAAWEHGYALVL
AEDAMSSNDAAMHRSSVENVFPRLGRVRDTGTILSALTA
>Mature_198_residues
SEPLQTLSALSAKTTALVLIDLQRGILPFAQGPHSAEQVLGASARLARCFRELAAPVVLVRVGWAPDYADAPRQPVDRPA
PTQPGGLPPQWWEQPAELEVAPTDIQITKRQWGAFYGTELDLQLRRRGITTIVLGGISTHVGVESTARAAWEHGYALVLA
EDAMSSNDAAMHRSSVENVFPRLGRVRDTGTILSALTA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=187, Percent_Identity=59.8930481283422, Blast_Score=232, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21496; Mature: 21365

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPLQTLSALSAKTTALVLIDLQRGILPFAQGPHSAEQVLGASARLARCFRELAAPVVL
CCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEE
VRVGWAPDYADAPRQPVDRPAPTQPGGLPPQWWEQPAELEVAPTDIQITKRQWGAFYGTE
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCEEEEHHHHCCCCCCC
LDLQLRRRGITTIVLGGISTHVGVESTARAAWEHGYALVLAEDAMSSNDAAMHRSSVENV
HHHHHHHCCCEEEEECCCHHCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHH
FPRLGRVRDTGTILSALTA
HHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SEPLQTLSALSAKTTALVLIDLQRGILPFAQGPHSAEQVLGASARLARCFRELAAPVVL
CCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCEEE
VRVGWAPDYADAPRQPVDRPAPTQPGGLPPQWWEQPAELEVAPTDIQITKRQWGAFYGTE
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCEEEEHHHHCCCCCCC
LDLQLRRRGITTIVLGGISTHVGVESTARAAWEHGYALVLAEDAMSSNDAAMHRSSVENV
HHHHHHHCCCEEEEECCCHHCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHH
FPRLGRVRDTGTILSALTA
HHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]