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The map label for this gene is atpH

Identifier: 187930580

GI number: 187930580

Start: 3687391

End: 3687927

Strand: Reverse

Name: atpH

Synonym: Rpic_3515

Alternate gene names: 187930580

Gene position: 3687927-3687391 (Counterclockwise)

Preceding gene: 187930581

Following gene: 187930579

Centisome position: 93.54

GC content: 63.5

Gene sequence:

>537_bases
ATGGCAGAACTCGCAACCGTTGCCCGTCCGTACGCAGAGGCGCTGTTCCGCGTGGCGAAGGCCGGCAATCTGGGTGCATG
GTCTGAGCTCGTGTCGGAAATGGGGCAAATTGCCGCCGTGCCCGACATGAAGGCAGTCGCCGATGATCCGAAGCTCTCCA
AAGCCGATGTGGCGGGGATCTTCCTGTCGGCGCTGAAATCTCCGGTATCGCATGAGGCGAAGGAACTGGTTGGCCTGCTG
GTGGCCAACAAGCGCCTGACGCTGTTGCCGGAAATTGCCGCGCAATTCCATGTGCTGCGGAATGCCAGCGAAGGCGCCGC
CGACGTCGAGATCACCAGTGCGTTCCCGCTTGAGGGCGCGCCCCTGACCGAACTGGTCGCCACGCTCGAACGCAAGTTCG
GCAAGAAGCTGCAGGCTCACGTGAGCGTCGATCCTTCGTTGATCGGCGGCGTGCGTGTGCAGATTGGCGACGAAGTGCTC
GACACCTCGGTGCGCGCGCGCCTGACGCAGATGCAGTCTGCGCTGACCGCCGCGTAA

Upstream 100 bases:

>100_bases
CTGTTCTGGCCGTCAAGGGTGCCGAGCAGATCCTCAAGCGTGAAGTCAATGCGCAGGTCCACGCCGATCTGCTCAATCAA
CTCAAGGCTGAGCTGTAATC

Downstream 100 bases:

>100_bases
TGCTGTTTCGCGAGGCGCCGATGCAATCGACGATATCGCGCCCGCAGACAGATTGAAGAATTAGGAGCATTCGATGCAAC
TGAACCCCTCCGAGATCAGC

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MAELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGIFLSALKSPVSHEAKELVGLL
VANKRLTLLPEIAAQFHVLRNASEGAADVEITSAFPLEGAPLTELVATLERKFGKKLQAHVSVDPSLIGGVRVQIGDEVL
DTSVRARLTQMQSALTAA

Sequences:

>Translated_178_residues
MAELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGIFLSALKSPVSHEAKELVGLL
VANKRLTLLPEIAAQFHVLRNASEGAADVEITSAFPLEGAPLTELVATLERKFGKKLQAHVSVDPSLIGGVRVQIGDEVL
DTSVRARLTQMQSALTAA
>Mature_177_residues
AELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGIFLSALKSPVSHEAKELVGLLV
ANKRLTLLPEIAAQFHVLRNASEGAADVEITSAFPLEGAPLTELVATLERKFGKKLQAHVSVDPSLIGGVRVQIGDEVLD
TSVRARLTQMQSALTAA

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=178, Percent_Identity=29.2134831460674, Blast_Score=87, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71984710, Length=176, Percent_Identity=28.9772727272727, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_RALPJ (B2UGV2)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001901067.1
- ProteinModelPortal:   B2UGV2
- SMR:   B2UGV2
- GeneID:   6288193
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_3515
- HOGENOM:   HBG668108
- OMA:   ASLERKF
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 18738; Mature: 18607

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGI
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHH
FLSALKSPVSHEAKELVGLLVANKRLTLLPEIAAQFHVLRNASEGAADVEITSAFPLEGA
HHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
PLTELVATLERKFGKKLQAHVSVDPSLIGGVRVQIGDEVLDTSVRARLTQMQSALTAA
CHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGI
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHH
FLSALKSPVSHEAKELVGLLVANKRLTLLPEIAAQFHVLRNASEGAADVEITSAFPLEGA
HHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
PLTELVATLERKFGKKLQAHVSVDPSLIGGVRVQIGDEVLDTSVRARLTQMQSALTAA
CHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA