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The map label for this gene is ybdK [C]

Identifier: 187930558

GI number: 187930558

Start: 3657475

End: 3658608

Strand: Reverse

Name: ybdK [C]

Synonym: Rpic_3493

Alternate gene names: 187930558

Gene position: 3658608-3657475 (Counterclockwise)

Preceding gene: 187930559

Following gene: 187930550

Centisome position: 92.8

GC content: 63.58

Gene sequence:

>1134_bases
ATGTCCCTCGAACCATTCTCGAAATCCGAAGCCCTGACGTTTGGCGTCGAGCTGGAATTGCAGCTCGTCAATCGTCATGA
CTACGACCTTGCCTCGGCGTCGCCCGACCTGCTGCGCATGCTCAAGGGCAAGGAATACCCCGGCGACATCAAGCCGGAGA
TCACCGATTCGATGATCGAAATCTCCACCGGCATCTGCCACAGCCATGACGAGGCACTCTGGCAGTTGCGCGAGATGCGC
GACCGCATGGCTGAAGCCGCCACGGCGCTGAACATCGGCATCTGCGGCGGCGGCACCCATCCGTTCCAGCAGTGGAGCCA
GCGCCAGATTTCACAATCGCCGCGCTATCAGTACATCTCGGATCTGTACGGTTACCTCGCCAAGCAGTTCACCGTGTTCG
GGCAGCACGTGCATATTGGCTGCCCGAATCCGGACGATGCGCTGTACCTGCTGCACGCCATGTCGCGCTACGTGCCGCAC
TTCATTGCGCTGGCCGCGTCGTCGCCGTTCGTGCAGGGCGTGGATACGGGGTTTGCTTCCGCGCGCATGAACTCGGTCAG
CGCCTTCCCGATGTCGGGCCGCGCGCCGTTCGTGCTGACGTGGGACGCCTTCATCGCGTACTTCGACAAGATGCACGCCA
CCGGCGTCATCGAAAGCATGAAAGACTTCTATTGGGACATCCGCCCCAAGCCTGAATTCGGCACGATCGAAGTCCGCGTG
ATGGACACCCCGCTGACCGTTGAACGCGCCGCCGCCATCGCCGCCTATATCCAGGCGCTGGGCCGCTGGCTGCTGCTCGA
TCGCCCGTTCATGCCCGTGGAAGACGATTACCTCGTCTACACCTTCAACCGCTTCCAGGCATGCCGTTTTGGACTGGCCG
GCGAATACGTCGACCCGGCCACGGGCAACCGTGGCGCGCTCGCCGATCACATCCTGGAAACAAGCAAGCTGCTGTCGGCG
CATGCCGAGGCGCTGTCGTCCGAAGGCGCGCTCGACATGGTGCGGGAGGTGGTGGAGGCGCGCGACGCCGATGCGGAATG
GATCCGCGCGGCGCAACGTGAAACCCGCAACCTGCATGAGACCGTGCGACGCGGTTGCGGGCGCTGGACACAGGCGGCAA
CGCAGCCCGCCTGA

Upstream 100 bases:

>100_bases
GCACGCTGGCGATCCAGCAGATTGCTGCGCCGATCCTGACCGCGCGTTCGCTGCGCTGGGCAGGTGAGGTGCGACAAGAC
GAAGGGAGGCACTGAGCCCC

Downstream 100 bases:

>100_bases
CGCATCGAAGAACGGTCAGTCGCTGCGGACCGTTCCCGGCGCTTCCAGCCAGCGCTGCATGAACACGAGGTCGAGCCACT
GGCCATGCTTGATGGCGGCC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSLEPFSKSEALTFGVELELQLVNRHDYDLASASPDLLRMLKGKEYPGDIKPEITDSMIEISTGICHSHDEALWQLREMR
DRMAEAATALNIGICGGGTHPFQQWSQRQISQSPRYQYISDLYGYLAKQFTVFGQHVHIGCPNPDDALYLLHAMSRYVPH
FIALAASSPFVQGVDTGFASARMNSVSAFPMSGRAPFVLTWDAFIAYFDKMHATGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERAAAIAAYIQALGRWLLLDRPFMPVEDDYLVYTFNRFQACRFGLAGEYVDPATGNRGALADHILETSKLLSA
HAEALSSEGALDMVREVVEARDADAEWIRAAQRETRNLHETVRRGCGRWTQAATQPA

Sequences:

>Translated_377_residues
MSLEPFSKSEALTFGVELELQLVNRHDYDLASASPDLLRMLKGKEYPGDIKPEITDSMIEISTGICHSHDEALWQLREMR
DRMAEAATALNIGICGGGTHPFQQWSQRQISQSPRYQYISDLYGYLAKQFTVFGQHVHIGCPNPDDALYLLHAMSRYVPH
FIALAASSPFVQGVDTGFASARMNSVSAFPMSGRAPFVLTWDAFIAYFDKMHATGVIESMKDFYWDIRPKPEFGTIEVRV
MDTPLTVERAAAIAAYIQALGRWLLLDRPFMPVEDDYLVYTFNRFQACRFGLAGEYVDPATGNRGALADHILETSKLLSA
HAEALSSEGALDMVREVVEARDADAEWIRAAQRETRNLHETVRRGCGRWTQAATQPA
>Mature_376_residues
SLEPFSKSEALTFGVELELQLVNRHDYDLASASPDLLRMLKGKEYPGDIKPEITDSMIEISTGICHSHDEALWQLREMRD
RMAEAATALNIGICGGGTHPFQQWSQRQISQSPRYQYISDLYGYLAKQFTVFGQHVHIGCPNPDDALYLLHAMSRYVPHF
IALAASSPFVQGVDTGFASARMNSVSAFPMSGRAPFVLTWDAFIAYFDKMHATGVIESMKDFYWDIRPKPEFGTIEVRVM
DTPLTVERAAAIAAYIQALGRWLLLDRPFMPVEDDYLVYTFNRFQACRFGLAGEYVDPATGNRGALADHILETSKLLSAH
AEALSSEGALDMVREVVEARDADAEWIRAAQRETRNLHETVRRGCGRWTQAATQPA

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=45.7994579945799, Blast_Score=347, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_RALPJ (B2UG86)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001901045.1
- ProteinModelPortal:   B2UG86
- SMR:   B2UG86
- GeneID:   6286134
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_3493
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13516
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42266; Mature: 42135

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEPFSKSEALTFGVELELQLVNRHDYDLASASPDLLRMLKGKEYPGDIKPEITDSMIE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHH
ISTGICHSHDEALWQLREMRDRMAEAATALNIGICGGGTHPFQQWSQRQISQSPRYQYIS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCHHHHH
DLYGYLAKQFTVFGQHVHIGCPNPDDALYLLHAMSRYVPHFIALAASSPFVQGVDTGFAS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH
ARMNSVSAFPMSGRAPFVLTWDAFIAYFDKMHATGVIESMKDFYWDIRPKPEFGTIEVRV
HHHCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAAIAAYIQALGRWLLLDRPFMPVEDDYLVYTFNRFQACRFGLAGEYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCC
TGNRGALADHILETSKLLSAHAEALSSEGALDMVREVVEARDADAEWIRAAQRETRNLHE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TVRRGCGRWTQAATQPA
HHHHHCCHHHHHCCCCC
>Mature Secondary Structure 
SLEPFSKSEALTFGVELELQLVNRHDYDLASASPDLLRMLKGKEYPGDIKPEITDSMIE
CCCCCCCCCCEEEEEEEEEEEECCCCCCHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHH
ISTGICHSHDEALWQLREMRDRMAEAATALNIGICGGGTHPFQQWSQRQISQSPRYQYIS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCHHHHH
DLYGYLAKQFTVFGQHVHIGCPNPDDALYLLHAMSRYVPHFIALAASSPFVQGVDTGFAS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH
ARMNSVSAFPMSGRAPFVLTWDAFIAYFDKMHATGVIESMKDFYWDIRPKPEFGTIEVRV
HHHCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAAIAAYIQALGRWLLLDRPFMPVEDDYLVYTFNRFQACRFGLAGEYVDPA
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCCC
TGNRGALADHILETSKLLSAHAEALSSEGALDMVREVVEARDADAEWIRAAQRETRNLHE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TVRRGCGRWTQAATQPA
HHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA