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The map label for this gene is rlpA [C]

Identifier: 187930530

GI number: 187930530

Start: 3623023

End: 3623775

Strand: Reverse

Name: rlpA [C]

Synonym: Rpic_3465

Alternate gene names: 187930530

Gene position: 3623775-3623023 (Counterclockwise)

Preceding gene: 187930534

Following gene: 187930528

Centisome position: 91.91

GC content: 67.2

Gene sequence:

>753_bases
ATGCATGTTAGACTCGCGGCCATGCTCAAGTTGACCCGTCCGATTTCCAGCCTTCCGGCCGGCCGCACCCTGCGTGCCTG
GCTGACGCATGGCACCGCGCTGCTGGTGCTGGCGGGCTGTGCCGCAGTTCCTAGCGAACCGCCCGCGGGCAGGCAATCCG
GTCTTCAGGCCAGCAAACCCGCTGCGCCTGCATTGAAGCTGGCCGACCCGCGCGACAACCCCGATGCCTGGGGCACGCTG
TCGTTCCGTGGCGTGCCGGATTCGAGCAGCCTCAAGCTCGACGAGAACACCGATACGAGCCCCGGCCTGCGCGCTGACCT
CGGCACCTTCGAACAGCGCGGCCTGGCGTCTTGGTACGGCCGCGGCTTCCACGGCCGCCGCACCGCCAGCGGCGAGCGCT
TCGATATGCATGCATTCACGGTGGCGCATCCGTCGCTGCCGCTGCAGAGCTGGGTGCTGGTGCGCAATCTCGCCAATGAC
CGCGTGGTCGTGGCCAAGGTGACCGATCGCGGCCCCTACTATGGCAAGCGCATCCTCGACATGTCGTATGCCGCGGCCAA
GCGGCTGGACTTCGTCAAGCGCGGCTCGACGCAGGTGGAAATCCGCCGACTGTCACGGGCGGAAGTTGAAGCGCTGCGCC
CTGAGCTGACGCAGACCGATGTCGCCAGCAACGACGGCGATGCCGATGTGGGTGGTGATGAACCCGCACCGGCGAAGAAG
AAGGCGATGAAGCGCCGCGCCAAGCACCGCTGA

Upstream 100 bases:

>100_bases
GGGTGCGCCGTTACATCGGAAAGAAAATATTACAAAATTGGTGCGAGATGACAGCATGATGTGATCGTTTTAATAGGAAA
TGTAAATAAACGATCGAAGC

Downstream 100 bases:

>100_bases
GCCGCTGATTCGGCCACCGTCCTGCCTCAGTCCTTCCCTTCGTTTTTCAACGCCAGCGCGCTCTGATACAGCGTGTCTAC
CGACGCGCCCGTAATCGCTC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MHVRLAAMLKLTRPISSLPAGRTLRAWLTHGTALLVLAGCAAVPSEPPAGRQSGLQASKPAAPALKLADPRDNPDAWGTL
SFRGVPDSSSLKLDENTDTSPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMHAFTVAHPSLPLQSWVLVRNLAND
RVVVAKVTDRGPYYGKRILDMSYAAAKRLDFVKRGSTQVEIRRLSRAEVEALRPELTQTDVASNDGDADVGGDEPAPAKK
KAMKRRAKHR

Sequences:

>Translated_250_residues
MHVRLAAMLKLTRPISSLPAGRTLRAWLTHGTALLVLAGCAAVPSEPPAGRQSGLQASKPAAPALKLADPRDNPDAWGTL
SFRGVPDSSSLKLDENTDTSPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMHAFTVAHPSLPLQSWVLVRNLAND
RVVVAKVTDRGPYYGKRILDMSYAAAKRLDFVKRGSTQVEIRRLSRAEVEALRPELTQTDVASNDGDADVGGDEPAPAKK
KAMKRRAKHR
>Mature_250_residues
MHVRLAAMLKLTRPISSLPAGRTLRAWLTHGTALLVLAGCAAVPSEPPAGRQSGLQASKPAAPALKLADPRDNPDAWGTL
SFRGVPDSSSLKLDENTDTSPGLRADLGTFEQRGLASWYGRGFHGRRTASGERFDMHAFTVAHPSLPLQSWVLVRNLAND
RVVVAKVTDRGPYYGKRILDMSYAAAKRLDFVKRGSTQVEIRRLSRAEVEALRPELTQTDVASNDGDADVGGDEPAPAKK
KAMKRRAKHR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=205, Percent_Identity=33.1707317073171, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 27167; Mature: 27167

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVRLAAMLKLTRPISSLPAGRTLRAWLTHGTALLVLAGCAAVPSEPPAGRQSGLQASKP
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCC
AAPALKLADPRDNPDAWGTLSFRGVPDSSSLKLDENTDTSPGLRADLGTFEQRGLASWYG
CCCCEEECCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCHHHHHC
RGFHGRRTASGERFDMHAFTVAHPSLPLQSWVLVRNLANDRVVVAKVTDRGPYYGKRILD
CCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH
MSYAAAKRLDFVKRGSTQVEIRRLSRAEVEALRPELTQTDVASNDGDADVGGDEPAPAKK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCHHH
KAMKRRAKHR
HHHHHHHCCC
>Mature Secondary Structure
MHVRLAAMLKLTRPISSLPAGRTLRAWLTHGTALLVLAGCAAVPSEPPAGRQSGLQASKP
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHCCCCCCCC
AAPALKLADPRDNPDAWGTLSFRGVPDSSSLKLDENTDTSPGLRADLGTFEQRGLASWYG
CCCCEEECCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCHHHHHC
RGFHGRRTASGERFDMHAFTVAHPSLPLQSWVLVRNLANDRVVVAKVTDRGPYYGKRILD
CCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH
MSYAAAKRLDFVKRGSTQVEIRRLSRAEVEALRPELTQTDVASNDGDADVGGDEPAPAKK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCHHH
KAMKRRAKHR
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]