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The map label for this gene is yraN [C]

Identifier: 187930528

GI number: 187930528

Start: 3621681

End: 3622058

Strand: Reverse

Name: yraN [C]

Synonym: Rpic_3463

Alternate gene names: 187930528

Gene position: 3622058-3621681 (Counterclockwise)

Preceding gene: 187930530

Following gene: 187930527

Centisome position: 91.87

GC content: 66.14

Gene sequence:

>378_bases
ATGCATGCGCCGCAGCCCATCACAGCCGCCACCGGTGAAGCCGGTGAAGACCGCGCGCTGCGCTACTTGCAGGCACGCGG
GTTGGCCGTGGTCAGCCGCAATTATCGCTGCAAGGGCGGCGAGATCGATCTGGTGATGCGCGATGCCGCCGGCGCGCTGG
TGTTCGTTGAAGTGCGTGCCCGCGTGGCGCGCTCCACGCAGCGCTTCGGCGGGGCGGCCGCAAGTGTCACGCCCGCCAAG
CAGCGTCGCCTGATTGCCGCGGCTGAAGATTTTCTCGCGCGGCAGGTTGAAGATGTGCCGGCCTGCCGTTTTGACGTCAT
CGCCATCGATGGCGCGCGTATCGAATGGATGCGCGATGCCTTTGGTGTTGACGCATGA

Upstream 100 bases:

>100_bases
ACATATAATGCGCCGGCGGGATAGTGCTGGTCGTGCGCCAGCAGGGTCCAGTCAGGATCACTCACGAGAACTTCTCTCTG
TTACTTGATTCAAACCGCGA

Downstream 100 bases:

>100_bases
ACCCCGCTCTTCTTTCTTCCGCACTTCATTCAAGGACAGCATGAAACTCTCGTCGCCTACGTTTGCCCGTTTCCGTCGCA
CGGTCACGCGCACCGCCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MHAPQPITAATGEAGEDRALRYLQARGLAVVSRNYRCKGGEIDLVMRDAAGALVFVEVRARVARSTQRFGGAAASVTPAK
QRRLIAAAEDFLARQVEDVPACRFDVIAIDGARIEWMRDAFGVDA

Sequences:

>Translated_125_residues
MHAPQPITAATGEAGEDRALRYLQARGLAVVSRNYRCKGGEIDLVMRDAAGALVFVEVRARVARSTQRFGGAAASVTPAK
QRRLIAAAEDFLARQVEDVPACRFDVIAIDGARIEWMRDAFGVDA
>Mature_125_residues
MHAPQPITAATGEAGEDRALRYLQARGLAVVSRNYRCKGGEIDLVMRDAAGALVFVEVRARVARSTQRFGGAAASVTPAK
QRRLIAAAEDFLARQVEDVPACRFDVIAIDGARIEWMRDAFGVDA

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=120, Percent_Identity=45, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3463_RALPJ (B2UG56)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001901015.1
- ProteinModelPortal:   B2UG56
- GeneID:   6287706
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_3463
- HOGENOM:   HBG710155
- OMA:   QWLKNAF
- ProtClustDB:   PRK14673
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13516; Mature: 13516

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPQPITAATGEAGEDRALRYLQARGLAVVSRNYRCKGGEIDLVMRDAAGALVFVEVRA
CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCEECCCCCEEEEEECCCCEEEEHHHHH
RVARSTQRFGGAAASVTPAKQRRLIAAAEDFLARQVEDVPACRFDVIAIDGARIEWMRDA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
FGVDA
CCCCC
>Mature Secondary Structure
MHAPQPITAATGEAGEDRALRYLQARGLAVVSRNYRCKGGEIDLVMRDAAGALVFVEVRA
CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCEECCCCCEEEEEECCCCEEEEHHHHH
RVARSTQRFGGAAASVTPAKQRRLIAAAEDFLARQVEDVPACRFDVIAIDGARIEWMRDA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
FGVDA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA