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The map label for this gene is yagR [H]

Identifier: 187930440

GI number: 187930440

Start: 3534926

End: 3537124

Strand: Reverse

Name: yagR [H]

Synonym: Rpic_3374

Alternate gene names: 187930440

Gene position: 3537124-3534926 (Counterclockwise)

Preceding gene: 187930441

Following gene: 187930438

Centisome position: 89.72

GC content: 68.39

Gene sequence:

>2199_bases
ATGAGCAACGTCGGCCAACCGCTGGACCGCACTGACGGTCTGCTTAAAGTCACGGGCCAGGCACGCTACTCGGCCGAGTT
TCAGGTGCCGCGTCTGGTGCATGCGGTGCTGGTGCAAAGCACGGTGCCCGCCGGCCGAATCACCCGGGTGGATACACACG
TTGCGCAGGCCATGCCCGGCGTGCTGCTGGTGATGACGCACGAGAACGCGCCGCGCTTGCCTAACGATGGCAAGCCCGCG
CTGGAACCGCCGGCCGGACGCGTGCTCTCGTTGCTGCAGGACGATCAGGTGCACTACAACGGCCAGCCCGTGGCGGTCGT
CGTGGGCGACACTCTGGAACACGCGCAGGCCGCAGCGCGCATGGTGCGCGTAGAGGTTGCCCAGCAGCCGGCGCGGCTCG
ACTTCGAAACCGCCCGCGCCGATGCGCACTCGCCCGGCAAGGTGCAGACGCAATCGGCCGATACCATGCGCGGCGATATG
GCCTCCGGCATGGCGCAGGCGGCGCAGCGCATCGAGGCCATCTACGGGACGCCCATGGAAGCGCACAACCCGATGGAGCC
GCACGCCACCATCGCCGTGTGGGAGGGCGATTCGCTCACGTTGTACGACAGCACGCAGTACGTCTCGGGTGTGCGCCGCA
CCGTCGCCAAGACGCTAGGTCTGTCGCCTGACAAGCTGCGTGTGGTGTGCCCGTTCGTGGGCGGCGGGTTCGGCTGCAAA
GGCTCGGTGTGGTCGCACGTGGTGCTGGCGGCGATGGCCGCGCGCCAAGCGGGGCGGCCCGTCAAGCTTGTTCTGGAGCG
GGCGCAGATGTTCGGCCCCGTCGGCGGGCGCCCGCGTACCGAGCAGCGCATCGCCATGGGCGCCGCCAGCGATGGCCGCT
TCACCGCCATCTCTCACGACTCGCTGACCACCACGTCGATGATTGAGGATTGGACCGAGCCCTGCGCCATCGTCACGCGC
ATGCTTTACGACACGCCCAACCAGCGGACGACGCATCGGCTGGCGCGTTTGAACGTCGGTACGCCCACCTTCCAGCGCGC
ACCCGGCGAAGCCACTGGCACGTTCGCGCTGGAAGTCGCGCTGGATGAGATGGCCTACGCGCTTGGCATCGACCCCGTGG
AACTGCGCCTGCGCAACGATGCCGCCCAAGACCCGGAAAAACGCATCCCGTGGTCGAGCAAATCCCTGGCTGCCTGCTAC
CGGACGGGCGCCGAGCGCTTCGGCTGGGCGCGCCGCAACCCGCAGCCGGGCAGCATGCGCGAGGGCACTACGCGCGTCGG
CTGGGGCATGGCCACGGCCACGTACCCAGCCAATCGCAGCGCGGCTGCTGCCACGGCGCGCTATCTGCCCGACGGTACGG
CGCAGGTCGAATCGGGATCGCAGGATCTGGGCACCGGCACTTACACGGTGATGACGCAGGTGGCGGCCGATGCCATGGGC
ATGCCCGTCGACCGCGTGCTCTTCAGTCTGGGCGATACGCGCATGCCCGAAGCGCCGGTGTCGGGCGGCTCGCAGAGCGT
GGCCAGCGTATCGCCCGCGGTGCAGGCCGCCGGCCAGCAGGCACGCGATGCATTGATTGCCGCGGCCATTGCCGACGCCA
GTTCGCCGCTGCATGGGCTGGACGCGGGCGCCATCACGGTGGCCGATGGTGTTCTGAGCGCACACAGCGGTGCTCGGGAA
CCGGCGGCTGCCGTAGTCGCCCGCTATGGTCGCCCCATCGAGGTGACCGCCAAGGTGCAGCCGGGCGAAGAGAAGCAGAA
GTTCTCAATGCACTCGTTCGGCGCGGTGTTTGCCGAGGTCCATGTCGACGCGGACCTGGGCGTGATCCGCGTCTCGCGCA
TAGTGGGGAGCTACGGCGTCGGGCGGTTGCTCAACGCCAAGACGGGCCGTAGCCAGCTCATGGGCGGCATCGTCTGGGGC
ATAGGCATGGCGCTGTTCGAAGAGAGCCTGCTGGACCCGCGTTACGGTCGCATCGTCAACAACAACCTGGCGGAGTACCA
CGTGCCCGTCAACGCCGATGTGCCCGACATCGACATCCTCGTACTCGACGAGGCGGACCCGCACATCAACCCGCTGGGCG
CCAAGGGCATCGGCGAGATCGGCATCACCGGCGTGCCGGCGGCCATCGCCAACGCCGTCTATCACGCCACCGGCCGGCGC
GTGCGCGAATTGCCGATCACGCTCGACAAGCTCATCTGA

Upstream 100 bases:

>100_bases
GCGCACAGCCACTGCGCGACAACGGCTTCAAGGTGCCGCTCGCACAGCGTGCGGTGGCGCGCGCGCTAACCGTGGCTTCC
GACCCGACTGGAGGCGTGGC

Downstream 100 bases:

>100_bases
GCGCGCATGAAAAAGCCCCGCCGGCGCATCACCAGCGGGGCCAGAGTGGGCCAAGAGGCGGAAAACGGAGGATGCCTGGA
GACAGGCCCGTAACTGATCA

Product: molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 731

Protein sequence:

>732_residues
MSNVGQPLDRTDGLLKVTGQARYSAEFQVPRLVHAVLVQSTVPAGRITRVDTHVAQAMPGVLLVMTHENAPRLPNDGKPA
LEPPAGRVLSLLQDDQVHYNGQPVAVVVGDTLEHAQAAARMVRVEVAQQPARLDFETARADAHSPGKVQTQSADTMRGDM
ASGMAQAAQRIEAIYGTPMEAHNPMEPHATIAVWEGDSLTLYDSTQYVSGVRRTVAKTLGLSPDKLRVVCPFVGGGFGCK
GSVWSHVVLAAMAARQAGRPVKLVLERAQMFGPVGGRPRTEQRIAMGAASDGRFTAISHDSLTTTSMIEDWTEPCAIVTR
MLYDTPNQRTTHRLARLNVGTPTFQRAPGEATGTFALEVALDEMAYALGIDPVELRLRNDAAQDPEKRIPWSSKSLAACY
RTGAERFGWARRNPQPGSMREGTTRVGWGMATATYPANRSAAAATARYLPDGTAQVESGSQDLGTGTYTVMTQVAADAMG
MPVDRVLFSLGDTRMPEAPVSGGSQSVASVSPAVQAAGQQARDALIAAAIADASSPLHGLDAGAITVADGVLSAHSGARE
PAAAVVARYGRPIEVTAKVQPGEEKQKFSMHSFGAVFAEVHVDADLGVIRVSRIVGSYGVGRLLNAKTGRSQLMGGIVWG
IGMALFEESLLDPRYGRIVNNNLAEYHVPVNADVPDIDILVLDEADPHINPLGAKGIGEIGITGVPAAIANAVYHATGRR
VRELPITLDKLI

Sequences:

>Translated_732_residues
MSNVGQPLDRTDGLLKVTGQARYSAEFQVPRLVHAVLVQSTVPAGRITRVDTHVAQAMPGVLLVMTHENAPRLPNDGKPA
LEPPAGRVLSLLQDDQVHYNGQPVAVVVGDTLEHAQAAARMVRVEVAQQPARLDFETARADAHSPGKVQTQSADTMRGDM
ASGMAQAAQRIEAIYGTPMEAHNPMEPHATIAVWEGDSLTLYDSTQYVSGVRRTVAKTLGLSPDKLRVVCPFVGGGFGCK
GSVWSHVVLAAMAARQAGRPVKLVLERAQMFGPVGGRPRTEQRIAMGAASDGRFTAISHDSLTTTSMIEDWTEPCAIVTR
MLYDTPNQRTTHRLARLNVGTPTFQRAPGEATGTFALEVALDEMAYALGIDPVELRLRNDAAQDPEKRIPWSSKSLAACY
RTGAERFGWARRNPQPGSMREGTTRVGWGMATATYPANRSAAAATARYLPDGTAQVESGSQDLGTGTYTVMTQVAADAMG
MPVDRVLFSLGDTRMPEAPVSGGSQSVASVSPAVQAAGQQARDALIAAAIADASSPLHGLDAGAITVADGVLSAHSGARE
PAAAVVARYGRPIEVTAKVQPGEEKQKFSMHSFGAVFAEVHVDADLGVIRVSRIVGSYGVGRLLNAKTGRSQLMGGIVWG
IGMALFEESLLDPRYGRIVNNNLAEYHVPVNADVPDIDILVLDEADPHINPLGAKGIGEIGITGVPAAIANAVYHATGRR
VRELPITLDKLI
>Mature_731_residues
SNVGQPLDRTDGLLKVTGQARYSAEFQVPRLVHAVLVQSTVPAGRITRVDTHVAQAMPGVLLVMTHENAPRLPNDGKPAL
EPPAGRVLSLLQDDQVHYNGQPVAVVVGDTLEHAQAAARMVRVEVAQQPARLDFETARADAHSPGKVQTQSADTMRGDMA
SGMAQAAQRIEAIYGTPMEAHNPMEPHATIAVWEGDSLTLYDSTQYVSGVRRTVAKTLGLSPDKLRVVCPFVGGGFGCKG
SVWSHVVLAAMAARQAGRPVKLVLERAQMFGPVGGRPRTEQRIAMGAASDGRFTAISHDSLTTTSMIEDWTEPCAIVTRM
LYDTPNQRTTHRLARLNVGTPTFQRAPGEATGTFALEVALDEMAYALGIDPVELRLRNDAAQDPEKRIPWSSKSLAACYR
TGAERFGWARRNPQPGSMREGTTRVGWGMATATYPANRSAAAATARYLPDGTAQVESGSQDLGTGTYTVMTQVAADAMGM
PVDRVLFSLGDTRMPEAPVSGGSQSVASVSPAVQAAGQQARDALIAAAIADASSPLHGLDAGAITVADGVLSAHSGAREP
AAAVVARYGRPIEVTAKVQPGEEKQKFSMHSFGAVFAEVHVDADLGVIRVSRIVGSYGVGRLLNAKTGRSQLMGGIVWGI
GMALFEESLLDPRYGRIVNNNLAEYHVPVNADVPDIDILVLDEADPHINPLGAKGIGEIGITGVPAAIANAVYHATGRRV
RELPITLDKLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=752, Percent_Identity=25.2659574468085, Blast_Score=157, Evalue=3e-38,
Organism=Homo sapiens, GI71773480, Length=751, Percent_Identity=25.965379494008, Blast_Score=147, Evalue=4e-35,
Organism=Escherichia coli, GI1786478, Length=732, Percent_Identity=38.2513661202186, Blast_Score=440, Evalue=1e-124,
Organism=Escherichia coli, GI1789230, Length=764, Percent_Identity=30.1047120418848, Blast_Score=265, Evalue=7e-72,
Organism=Escherichia coli, GI1789246, Length=806, Percent_Identity=28.0397022332506, Blast_Score=189, Evalue=7e-49,
Organism=Caenorhabditis elegans, GI17540638, Length=722, Percent_Identity=21.4681440443213, Blast_Score=128, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI32566215, Length=738, Percent_Identity=21.8157181571816, Blast_Score=121, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17539860, Length=741, Percent_Identity=21.1875843454791, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24647199, Length=702, Percent_Identity=22.6495726495727, Blast_Score=149, Evalue=5e-36,
Organism=Drosophila melanogaster, GI24647195, Length=725, Percent_Identity=24.2758620689655, Blast_Score=131, Evalue=2e-30,
Organism=Drosophila melanogaster, GI17737937, Length=731, Percent_Identity=25.1709986320109, Blast_Score=126, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24647197, Length=716, Percent_Identity=24.1620111731844, Blast_Score=124, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24647201, Length=728, Percent_Identity=22.8021978021978, Blast_Score=120, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 77679; Mature: 77548

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVGQPLDRTDGLLKVTGQARYSAEFQVPRLVHAVLVQSTVPAGRITRVDTHVAQAMPG
CCCCCCCCHHCCCEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCC
VLLVMTHENAPRLPNDGKPALEPPAGRVLSLLQDDQVHYNGQPVAVVVGDTLEHAQAAAR
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEEECCCHHHHHHHHH
MVRVEVAQQPARLDFETARADAHSPGKVQTQSADTMRGDMASGMAQAAQRIEAIYGTPME
HHHHHHHCCCCCCCHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
AHNPMEPHATIAVWEGDSLTLYDSTQYVSGVRRTVAKTLGLSPDKLRVVCPFVGGGFGCK
CCCCCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
GSVWSHVVLAAMAARQAGRPVKLVLERAQMFGPVGGRPRTEQRIAMGAASDGRFTAISHD
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCCEEEEECC
SLTTTSMIEDWTEPCAIVTRMLYDTPNQRTTHRLARLNVGTPTFQRAPGEATGTFALEVA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEH
LDEMAYALGIDPVELRLRNDAAQDPEKRIPWSSKSLAACYRTGAERFGWARRNPQPGSMR
HHHHHHHHCCCHHEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
EGTTRVGWGMATATYPANRSAAAATARYLPDGTAQVESGSQDLGTGTYTVMTQVAADAMG
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
MPVDRVLFSLGDTRMPEAPVSGGSQSVASVSPAVQAAGQQARDALIAAAIADASSPLHGL
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DAGAITVADGVLSAHSGAREPAAAVVARYGRPIEVTAKVQPGEEKQKFSMHSFGAVFAEV
CCCCEEEHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEE
HVDADLGVIRVSRIVGSYGVGRLLNAKTGRSQLMGGIVWGIGMALFEESLLDPRYGRIVN
EECCCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
NNLAEYHVPVNADVPDIDILVLDEADPHINPLGAKGIGEIGITGVPAAIANAVYHATGRR
CCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
VRELPITLDKLI
HHCCCCCHHHCC
>Mature Secondary Structure 
SNVGQPLDRTDGLLKVTGQARYSAEFQVPRLVHAVLVQSTVPAGRITRVDTHVAQAMPG
CCCCCCCHHCCCEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCC
VLLVMTHENAPRLPNDGKPALEPPAGRVLSLLQDDQVHYNGQPVAVVVGDTLEHAQAAAR
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCEEEEEECCCHHHHHHHHH
MVRVEVAQQPARLDFETARADAHSPGKVQTQSADTMRGDMASGMAQAAQRIEAIYGTPME
HHHHHHHCCCCCCCHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
AHNPMEPHATIAVWEGDSLTLYDSTQYVSGVRRTVAKTLGLSPDKLRVVCPFVGGGFGCK
CCCCCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
GSVWSHVVLAAMAARQAGRPVKLVLERAQMFGPVGGRPRTEQRIAMGAASDGRFTAISHD
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCCEEEEECC
SLTTTSMIEDWTEPCAIVTRMLYDTPNQRTTHRLARLNVGTPTFQRAPGEATGTFALEVA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEH
LDEMAYALGIDPVELRLRNDAAQDPEKRIPWSSKSLAACYRTGAERFGWARRNPQPGSMR
HHHHHHHHCCCHHEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
EGTTRVGWGMATATYPANRSAAAATARYLPDGTAQVESGSQDLGTGTYTVMTQVAADAMG
CCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
MPVDRVLFSLGDTRMPEAPVSGGSQSVASVSPAVQAAGQQARDALIAAAIADASSPLHGL
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DAGAITVADGVLSAHSGAREPAAAVVARYGRPIEVTAKVQPGEEKQKFSMHSFGAVFAEV
CCCCEEEHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEE
HVDADLGVIRVSRIVGSYGVGRLLNAKTGRSQLMGGIVWGIGMALFEESLLDPRYGRIVN
EECCCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHC
NNLAEYHVPVNADVPDIDILVLDEADPHINPLGAKGIGEIGITGVPAAIANAVYHATGRR
CCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
VRELPITLDKLI
HHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]