Click here to switch to the map view.

The map label for this gene is omp32 [H]

Identifier: 187930438

GI number: 187930438

Start: 3532866

End: 3533996

Strand: Reverse

Name: omp32 [H]

Synonym: Rpic_3372

Alternate gene names: 187930438

Gene position: 3533996-3532866 (Counterclockwise)

Preceding gene: 187930440

Following gene: 187930437

Centisome position: 89.64

GC content: 61.01

Gene sequence:

>1131_bases
ATGAAAAAGTCTGCCATTCTGGTCGCAGTTGGCGCCCTGTTCGCAGGTTCTGCCTATGCCCAATCGAGCGTGACGCTGTA
CGGTATTGTCGATACCAGCATTCACTACATCAACAACGCCAACCAAGCTGGCAACAGCGTGACCCAGATGGAAAGCGGTG
CTGTGTCGAACAGCCGCTGGGGCCTGAAGGGCTCGGAAGACCTGGGTGGCGGCAACAAGGCACTGTTCGTGCTGGAAAGC
GGCTTCAACTCCGACTCGGGCACGATGAGCAGCAAGGGTACGCTGTTCAACCGTCAATCGTTCGTGGGTCTGTCGAACAA
GGACCTGGGCACCATCACCCTGGGCCGTCAATACAACTTCGGCTTCACGACGGGCGGCAACTTCGACCCGCTGGGCGTGG
GTAACTACGACGGCAATTCGTGGATGTACTACGGCCTGACCGGTCTGCGTGAATCGAACATGCTGAAGTACGAAGGCAAG
TGGAACGGCCTGTCGGTCGGCCTGGCCTACGGCTTTGGCGAAGTGCCGGGTGCTGCAAGCCAGAACTCGTACGTTGGCGG
CACGGTGGCCTATGAATTCGGCCCGGCCTACATCGGCGCATTCGCACAGCAGCACAAGGATATTGCTGGCAACAAGCAAA
CCGTTTGGGGTATCGGTGGTAACTACACCATCGCTGCAGCCAAGCTGTTCGCAGGCTACATCGACAGCAGCGACGCCACG
GGTTGCGTGAACAGCTCGGCTAACTGCGTCGGCGGCAGCGCCTTCGGCCTGAACATCTACGGCAACGCCACCTCGGGCGC
TGGCCTGACCCCGGGCGCCACGAAGCGTCGTGACCACGTCGGCATCCTGGGCGTGACGTACAACATCACCCCGGCCCTGG
CTCTGACGGGCGCGTTCTACTACGACAGCATCAACAACGCTGCCCTGACCGCCGGCAACGACGGCAAGCGCTACACCGGC
GTGCTGCTGGCCGAGTACGCCCTGTCCAAGCGCACGCAAGTGTATGGCACGGTCGACTACAACAAGGTCAAGGACGCAGC
TCTGCCGGAACTGTCGGGTGGCGGCAACGCAACCGGCGTTGGCAAGTCGAACCAGACGAGCGTTGGCGTGGGTATCCGCC
ACATCTTCTAA

Upstream 100 bases:

>100_bases
TGCGCGGCACTTCCGACACGGAAGTTAAGGAAACGGAGGAGCCCAACCTCATGCACACGGGGTCGGGCGGTTTGAGACAA
CTCTTTTATTACGAGCCCAC

Downstream 100 bases:

>100_bases
TCGACGCTGTCACTCGATTGGGAACGGAAAAGGCGCCTTCGGGCGCCTTTTCTTTTGCCTGCCGTTTTTGTATTTCGCCG
GGGCGAGCTTGCCTGGGCAT

Product: porin

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKKSAILVAVGALFAGSAYAQSSVTLYGIVDTSIHYINNANQAGNSVTQMESGAVSNSRWGLKGSEDLGGGNKALFVLES
GFNSDSGTMSSKGTLFNRQSFVGLSNKDLGTITLGRQYNFGFTTGGNFDPLGVGNYDGNSWMYYGLTGLRESNMLKYEGK
WNGLSVGLAYGFGEVPGAASQNSYVGGTVAYEFGPAYIGAFAQQHKDIAGNKQTVWGIGGNYTIAAAKLFAGYIDSSDAT
GCVNSSANCVGGSAFGLNIYGNATSGAGLTPGATKRRDHVGILGVTYNITPALALTGAFYYDSINNAALTAGNDGKRYTG
VLLAEYALSKRTQVYGTVDYNKVKDAALPELSGGGNATGVGKSNQTSVGVGIRHIF

Sequences:

>Translated_376_residues
MKKSAILVAVGALFAGSAYAQSSVTLYGIVDTSIHYINNANQAGNSVTQMESGAVSNSRWGLKGSEDLGGGNKALFVLES
GFNSDSGTMSSKGTLFNRQSFVGLSNKDLGTITLGRQYNFGFTTGGNFDPLGVGNYDGNSWMYYGLTGLRESNMLKYEGK
WNGLSVGLAYGFGEVPGAASQNSYVGGTVAYEFGPAYIGAFAQQHKDIAGNKQTVWGIGGNYTIAAAKLFAGYIDSSDAT
GCVNSSANCVGGSAFGLNIYGNATSGAGLTPGATKRRDHVGILGVTYNITPALALTGAFYYDSINNAALTAGNDGKRYTG
VLLAEYALSKRTQVYGTVDYNKVKDAALPELSGGGNATGVGKSNQTSVGVGIRHIF
>Mature_376_residues
MKKSAILVAVGALFAGSAYAQSSVTLYGIVDTSIHYINNANQAGNSVTQMESGAVSNSRWGLKGSEDLGGGNKALFVLES
GFNSDSGTMSSKGTLFNRQSFVGLSNKDLGTITLGRQYNFGFTTGGNFDPLGVGNYDGNSWMYYGLTGLRESNMLKYEGK
WNGLSVGLAYGFGEVPGAASQNSYVGGTVAYEFGPAYIGAFAQQHKDIAGNKQTVWGIGGNYTIAAAKLFAGYIDSSDAT
GCVNSSANCVGGSAFGLNIYGNATSGAGLTPGATKRRDHVGILGVTYNITPALALTGAFYYDSINNAALTAGNDGKRYTG
VLLAEYALSKRTQVYGTVDYNKVKDAALPELSGGGNATGVGKSNQTSVGVGIRHIF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38956; Mature: 38956

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAILVAVGALFAGSAYAQSSVTLYGIVDTSIHYINNANQAGNSVTQMESGAVSNSRW
CCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECEEEEECCCCCCCCCHHHHHCCCCCCCCC
GLKGSEDLGGGNKALFVLESGFNSDSGTMSSKGTLFNRQSFVGLSNKDLGTITLGRQYNF
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEEECCCCCCCEEEEECCEECC
GFTTGGNFDPLGVGNYDGNSWMYYGLTGLRESNMLKYEGKWNGLSVGLAYGFGEVPGAAS
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCC
QNSYVGGTVAYEFGPAYIGAFAQQHKDIAGNKQTVWGIGGNYTIAAAKLFAGYIDSSDAT
CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHCCCCCCC
GCVNSSANCVGGSAFGLNIYGNATSGAGLTPGATKRRDHVGILGVTYNITPALALTGAFY
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHEEEEEE
YDSINNAALTAGNDGKRYTGVLLAEYALSKRTQVYGTVDYNKVKDAALPELSGGGNATGV
ECCCCCCEEEECCCCCEEEEEEEEHHHHCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCC
GKSNQTSVGVGIRHIF
CCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKSAILVAVGALFAGSAYAQSSVTLYGIVDTSIHYINNANQAGNSVTQMESGAVSNSRW
CCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECEEEEECCCCCCCCCHHHHHCCCCCCCCC
GLKGSEDLGGGNKALFVLESGFNSDSGTMSSKGTLFNRQSFVGLSNKDLGTITLGRQYNF
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEEECCCCCCCEEEEECCEECC
GFTTGGNFDPLGVGNYDGNSWMYYGLTGLRESNMLKYEGKWNGLSVGLAYGFGEVPGAAS
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCC
QNSYVGGTVAYEFGPAYIGAFAQQHKDIAGNKQTVWGIGGNYTIAAAKLFAGYIDSSDAT
CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHCCCCCCC
GCVNSSANCVGGSAFGLNIYGNATSGAGLTPGATKRRDHVGILGVTYNITPALALTGAFY
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHEEEEEE
YDSINNAALTAGNDGKRYTGVLLAEYALSKRTQVYGTVDYNKVKDAALPELSGGGNATGV
ECCCCCCEEEECCCCCEEEEEEEEHHHHCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCC
GKSNQTSVGVGIRHIF
CCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]