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The map label for this gene is yrbD [C]

Identifier: 187930305

GI number: 187930305

Start: 3383008

End: 3383535

Strand: Reverse

Name: yrbD [C]

Synonym: Rpic_3238

Alternate gene names: 187930305

Gene position: 3383535-3383008 (Counterclockwise)

Preceding gene: 187930306

Following gene: 187930304

Centisome position: 85.82

GC content: 59.47

Gene sequence:

>528_bases
ATGCGTAAAAGCGTCCTCGATTTCTGGGTCGGCCTGTTCGTTCTGGTGGGCATCATTGCGCTGCTGTTCCTGGCGCTCAA
AGCGGGCAATATGAGTTCGTTCTCGTTTGCCAAGACTTACCAGGTGAAGGCGGCCTTCGACAATATCGGCGGGTTGAAGG
TGCGGGCGCCGGTCAAGAGTTCGGGTGTGGTGGTCGGCCGTGTGTCGCAGATCCTGTTCGATGACAAGAGCTACCAAGCC
ATCGCGGTGCTCGACATGGATCAGCGCTATCAGTTTCCAAAAGACAGTTCGGCCAAGGTCCTGACCTCGGGTCTGCTCGG
TGAGCAATACATTGGCATTGAACCGGGTGGCGACTCGGTCATGCTTGCCAGCGGCAGCAAGATCACCATGACGCAGTCGG
CGGTGGTGCTGGAAAACCTGATCAGCCAGTTCCTCTATAGCAAGGCCGCGGATGCCGGTGCCGGCAGCGCGAATGGCAGT
GCCGGCGGAGCCAAGCCGGCCGAGGGCAGCGGGAGCAATAAGCCATGA

Upstream 100 bases:

>100_bases
GTGATCGCGTCGCTCACCGTGCTGGCGCTGGATTTCGTGCTGACGGCACTGATGTTCAGCTGAGCGGCCGGTTGTCGTTA
GCGTTCAACGAGAAAAGATC

Downstream 100 bases:

>100_bases
AATTAACAACATCCATCCGTATGCTGCGCGGCATTGCGCTGGCTCTGGCTGCAGGTACCACCCTGCTGGCCGGCTGTGCG
ACGGGACCGAATGCTAATCC

Product: Mammalian cell entry related domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MRKSVLDFWVGLFVLVGIIALLFLALKAGNMSSFSFAKTYQVKAAFDNIGGLKVRAPVKSSGVVVGRVSQILFDDKSYQA
IAVLDMDQRYQFPKDSSAKVLTSGLLGEQYIGIEPGGDSVMLASGSKITMTQSAVVLENLISQFLYSKAADAGAGSANGS
AGGAKPAEGSGSNKP

Sequences:

>Translated_175_residues
MRKSVLDFWVGLFVLVGIIALLFLALKAGNMSSFSFAKTYQVKAAFDNIGGLKVRAPVKSSGVVVGRVSQILFDDKSYQA
IAVLDMDQRYQFPKDSSAKVLTSGLLGEQYIGIEPGGDSVMLASGSKITMTQSAVVLENLISQFLYSKAADAGAGSANGS
AGGAKPAEGSGSNKP
>Mature_175_residues
MRKSVLDFWVGLFVLVGIIALLFLALKAGNMSSFSFAKTYQVKAAFDNIGGLKVRAPVKSSGVVVGRVSQILFDDKSYQA
IAVLDMDQRYQFPKDSSAKVLTSGLLGEQYIGIEPGGDSVMLASGSKITMTQSAVVLENLISQFLYSKAADAGAGSANGS
AGGAKPAEGSGSNKP

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=180, Percent_Identity=43.3333333333333, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 18249; Mature: 18249

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSVLDFWVGLFVLVGIIALLFLALKAGNMSSFSFAKTYQVKAAFDNIGGLKVRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEECCCCCCCEEEECCCCC
SGVVVGRVSQILFDDKSYQAIAVLDMDQRYQFPKDSSAKVLTSGLLGEQYIGIEPGGDSV
CCEEEEEHHHHHCCCCCCCEEEEEECHHHCCCCCCCCHHHHHHHCCCCCEEEECCCCCEE
MLASGSKITMTQSAVVLENLISQFLYSKAADAGAGSANGSAGGAKPAEGSGSNKP
EEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKSVLDFWVGLFVLVGIIALLFLALKAGNMSSFSFAKTYQVKAAFDNIGGLKVRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEECCCCCCCEEEECCCCC
SGVVVGRVSQILFDDKSYQAIAVLDMDQRYQFPKDSSAKVLTSGLLGEQYIGIEPGGDSV
CCEEEEEHHHHHCCCCCCCEEEEEECHHHCCCCCCCCHHHHHHHCCCCCEEEECCCCCEE
MLASGSKITMTQSAVVLENLISQFLYSKAADAGAGSANGSAGGAKPAEGSGSNKP
EEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]