Click here to switch to the map view.

The map label for this gene is yccS [C]

Identifier: 187930198

GI number: 187930198

Start: 3277818

End: 3280034

Strand: Reverse

Name: yccS [C]

Synonym: Rpic_3131

Alternate gene names: 187930198

Gene position: 3280034-3277818 (Counterclockwise)

Preceding gene: 187930199

Following gene: 187930188

Centisome position: 83.2

GC content: 65.04

Gene sequence:

>2217_bases
ATGGACTACGTACACGATCCACGCACCTTCCTCTACAGCCATTACGTCTCGCGCGGCATCCGTACTGCCACCGGCGTGAT
CGGTCTGACACTGCTCGCGCTGCTGGTGATGGACCTGCAGGGCGCGATGGTGGTGTCGATCGGTGCGCTGTGCACGAGCC
TCATGGATTTGCCCAGCCCGCTGCGGCACAAGTTCAACGAGATGATGGCGTGCGTGCTGCTGACGACCGCCGTCACCTTT
CTCGTGGCGGTGGTGACGCCGTACGCGATCCTGCCGGTGGTGATCGTGGTGGTGAGCTTCCTCGCGGGACTCATGGTGGC
GTACGGCAACAAGACAATGCCGCTGCAGTTCGCGGCGCTGTTCGTCATGACGCTCACGTTCACCGAGGAATTCGCCTTCC
GCGAAGCGGTGGAGCACACGCTGCAGTTCTTCCTCGGCGCCATCGGCTACATGGCGTTTGCGATGGCGGTGGCGTGGGGC
CAGCGCCGCCGCATCAAAGAGCAGGTGCTGGCCGAATGCCTGTACGAACTGGCCGTGTACGTGGAGTGCAAAGCCGGCTT
CTACGACGCCTCCAAGGATTTCGACGAGCAGTTCAACGCGCTCGTGCGCCAGCAGATTGCCGTGGCTGACAAGCAGCAGG
TGGCGCGCGATTTCGTCTTTCGCGACAACCGCACCACGAGCGACGGCCGCCTCGTGCAGATTCACATGCGGATGCTCGAT
ATCTACGAGTATCTGCTGTCGTCCAACACCGACTACCCGCTGCTGCGCCAGTGGCTGGCCGACGCCGAGGTGATGCGCCT
GCTGCGCGACGTGATCGAACGCTTGCGCATGGACATCGAAGGCGTCGCCTATGCCGTCGGCCGCGACCGGCCGTCACCCA
CGCCGGTGTCGTACGACCAGGAGGTGGCCGCCATTGAAGGCGCGCTGCACGAGCTGCAGCACAACCATCACGGCGTGCCG
ATCGAGGCGATTGCCGCGCTCGAAGAATCGGTGGCCACGGTGCGGGGCGCAATCCGCCTCATGGCGCAGTTGCACGCCGC
CACCGCTACGCCGGTCGAGCTGTCGCAGGTGCTGCTGCGTCCCGACATGACGCCGTTTCTCACGCGCCAGAAGTACGAGC
TGCGGCTGGTGCTGGAAGAGTTGACGTGGCGTTCGCCGGTGCTGCGCTTTGCGCTGCGCATTTCCATGGCCGTGGCGGCC
GGGCTGTGGATTGCCGACCATCTCCCATATAGCTCGCACGGCTACTGGGTCTTGCTGACCATCGTCGTGATTCTCAAGCC
GACGTTCAGCATGACGCGCCAGCGCAACTTCGACCGGGTGCTGGGTACGCTCATCGGTTGCGTCATTGCCGCCGTGATCC
TGCGGTACACGCATTCGACGTGGATCCTGATGGGCGTGCTGTACCTGTCCACCGCCGCCAGCGCCGCGTTCGTTACCGTG
CGCTACCGCTACACGGCCATTGCGGCGTGCGTGCAGGTGCTCATCCAGATCAACCTGCTGCTGCCCGGCAGCAAGGGCGC
CATCGGTGAACGGCTGGTCGATACGCTGATCGGCGCGGCCATCGCCACGGCCTTCAGCTACGTCCTGCCAAGCTGGGAAT
ACCGCAACCTTCCCAAGCTGGTGGACGACGTGCTGCGCACCAACCGCCGCTTTATCGAAGCCGCGCGCGACTTGCTGCTC
GGCTCGCTCAAGGATGACTTCGTCTACCGCGTGCAGCGCAAGCAGTTCATGGAGTCGCTCACGGGGCTCATCGCCGCCTT
CGCGCGCATGCTCGACGAGCCCAAGAGCCGGCACCGTGCCGTCGACAACCTGAACCGCTTCATCGTGCAGAACTACCTCG
TGGCGGCGCACGTTGCCGCGGTGCGCATCCTTGTGCGGCAACGGGCGCAGGAGCTAGACGAAGCCGATACGCGGGCGCTG
GTCGAGCAAACGGCTGAGGCCGCACTCGAAAGCCTGGCGCGCGCCCAGGAGCGCTTTGACCAGGCCGTGCAAGAGGGCGG
CTGGGGCGTGCGCCCTCGCGACACACAGGAGCTGGGCGCAGCCGACTTCGCCGATCAGTCGGCACGCTCGCGCATGGTCG
ATGCGGCCGCCGAATCCGAATCGCTGTCGGCGATGCACCTGCTAGAGCGGCGTCTGCAGGCGCTGCGGGCTGACACGTCC
AAAATCGCATTGCGTTGTGGTGCGCTCGGACGCGCGCTGCGTATTTCGAAGGACTAG

Upstream 100 bases:

>100_bases
CAGCAGAGCCCTCGCCGCTGCGCTCGGCCTGGCTGGGCAAACGGGCAGCGGCGCGCAGCACGCGCGCGTCACGCGGCAAG
TCAGCCTGACACGTAGCCCG

Downstream 100 bases:

>100_bases
GCGCGGCCGGCGGCTGAAAGGCTCCGCGCCGGCGGCGGGATCTTCCACCGCGACTGCGCTGAGCCCCCGACCCTGGACGA
CGGGGCTCAGAGAGCCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 738

Protein sequence:

>738_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLVMDLQGAMVVSIGALCTSLMDLPSPLRHKFNEMMACVLLTTAVTF
LVAVVTPYAILPVVIVVVSFLAGLMVAYGNKTMPLQFAALFVMTLTFTEEFAFREAVEHTLQFFLGAIGYMAFAMAVAWG
QRRRIKEQVLAECLYELAVYVECKAGFYDASKDFDEQFNALVRQQIAVADKQQVARDFVFRDNRTTSDGRLVQIHMRMLD
IYEYLLSSNTDYPLLRQWLADAEVMRLLRDVIERLRMDIEGVAYAVGRDRPSPTPVSYDQEVAAIEGALHELQHNHHGVP
IEAIAALEESVATVRGAIRLMAQLHAATATPVELSQVLLRPDMTPFLTRQKYELRLVLEELTWRSPVLRFALRISMAVAA
GLWIADHLPYSSHGYWVLLTIVVILKPTFSMTRQRNFDRVLGTLIGCVIAAVILRYTHSTWILMGVLYLSTAASAAFVTV
RYRYTAIAACVQVLIQINLLLPGSKGAIGERLVDTLIGAAIATAFSYVLPSWEYRNLPKLVDDVLRTNRRFIEAARDLLL
GSLKDDFVYRVQRKQFMESLTGLIAAFARMLDEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRAQELDEADTRAL
VEQTAEAALESLARAQERFDQAVQEGGWGVRPRDTQELGAADFADQSARSRMVDAAAESESLSAMHLLERRLQALRADTS
KIALRCGALGRALRISKD

Sequences:

>Translated_738_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLVMDLQGAMVVSIGALCTSLMDLPSPLRHKFNEMMACVLLTTAVTF
LVAVVTPYAILPVVIVVVSFLAGLMVAYGNKTMPLQFAALFVMTLTFTEEFAFREAVEHTLQFFLGAIGYMAFAMAVAWG
QRRRIKEQVLAECLYELAVYVECKAGFYDASKDFDEQFNALVRQQIAVADKQQVARDFVFRDNRTTSDGRLVQIHMRMLD
IYEYLLSSNTDYPLLRQWLADAEVMRLLRDVIERLRMDIEGVAYAVGRDRPSPTPVSYDQEVAAIEGALHELQHNHHGVP
IEAIAALEESVATVRGAIRLMAQLHAATATPVELSQVLLRPDMTPFLTRQKYELRLVLEELTWRSPVLRFALRISMAVAA
GLWIADHLPYSSHGYWVLLTIVVILKPTFSMTRQRNFDRVLGTLIGCVIAAVILRYTHSTWILMGVLYLSTAASAAFVTV
RYRYTAIAACVQVLIQINLLLPGSKGAIGERLVDTLIGAAIATAFSYVLPSWEYRNLPKLVDDVLRTNRRFIEAARDLLL
GSLKDDFVYRVQRKQFMESLTGLIAAFARMLDEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRAQELDEADTRAL
VEQTAEAALESLARAQERFDQAVQEGGWGVRPRDTQELGAADFADQSARSRMVDAAAESESLSAMHLLERRLQALRADTS
KIALRCGALGRALRISKD
>Mature_738_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLVMDLQGAMVVSIGALCTSLMDLPSPLRHKFNEMMACVLLTTAVTF
LVAVVTPYAILPVVIVVVSFLAGLMVAYGNKTMPLQFAALFVMTLTFTEEFAFREAVEHTLQFFLGAIGYMAFAMAVAWG
QRRRIKEQVLAECLYELAVYVECKAGFYDASKDFDEQFNALVRQQIAVADKQQVARDFVFRDNRTTSDGRLVQIHMRMLD
IYEYLLSSNTDYPLLRQWLADAEVMRLLRDVIERLRMDIEGVAYAVGRDRPSPTPVSYDQEVAAIEGALHELQHNHHGVP
IEAIAALEESVATVRGAIRLMAQLHAATATPVELSQVLLRPDMTPFLTRQKYELRLVLEELTWRSPVLRFALRISMAVAA
GLWIADHLPYSSHGYWVLLTIVVILKPTFSMTRQRNFDRVLGTLIGCVIAAVILRYTHSTWILMGVLYLSTAASAAFVTV
RYRYTAIAACVQVLIQINLLLPGSKGAIGERLVDTLIGAAIATAFSYVLPSWEYRNLPKLVDDVLRTNRRFIEAARDLLL
GSLKDDFVYRVQRKQFMESLTGLIAAFARMLDEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRAQELDEADTRAL
VEQTAEAALESLARAQERFDQAVQEGGWGVRPRDTQELGAADFADQSARSRMVDAAAESESLSAMHLLERRLQALRADTS
KIALRCGALGRALRISKD

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=615, Percent_Identity=22.4390243902439, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87082248, Length=729, Percent_Identity=22.6337448559671, Blast_Score=105, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82654; Mature: 82654

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLVMDLQGAMVVSIGALCTSLMDLPSP
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
LRHKFNEMMACVLLTTAVTFLVAVVTPYAILPVVIVVVSFLAGLMVAYGNKTMPLQFAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FVMTLTFTEEFAFREAVEHTLQFFLGAIGYMAFAMAVAWGQRRRIKEQVLAECLYELAVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VECKAGFYDASKDFDEQFNALVRQQIAVADKQQVARDFVFRDNRTTSDGRLVQIHMRMLD
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
IYEYLLSSNTDYPLLRQWLADAEVMRLLRDVIERLRMDIEGVAYAVGRDRPSPTPVSYDQ
HHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
EVAAIEGALHELQHNHHGVPIEAIAALEESVATVRGAIRLMAQLHAATATPVELSQVLLR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
PDMTPFLTRQKYELRLVLEELTWRSPVLRFALRISMAVAAGLWIADHLPYSSHGYWVLLT
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
IVVILKPTFSMTRQRNFDRVLGTLIGCVIAAVILRYTHSTWILMGVLYLSTAASAAFVTV
HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYRYTAIAACVQVLIQINLLLPGSKGAIGERLVDTLIGAAIATAFSYVLPSWEYRNLPKL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
VDDVLRTNRRFIEAARDLLLGSLKDDFVYRVQRKQFMESLTGLIAAFARMLDEPKSRHRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VDNLNRFIVQNYLVAAHVAAVRILVRQRAQELDEADTRALVEQTAEAALESLARAQERFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAVQEGGWGVRPRDTQELGAADFADQSARSRMVDAAAESESLSAMHLLERRLQALRADTS
HHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KIALRCGALGRALRISKD
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]