Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 187929861

GI number: 187929861

Start: 2903553

End: 2904305

Strand: Reverse

Name: yraR [H]

Synonym: Rpic_2792

Alternate gene names: 187929861

Gene position: 2904305-2903553 (Counterclockwise)

Preceding gene: 187929863

Following gene: 187929859

Centisome position: 73.67

GC content: 68.39

Gene sequence:

>753_bases
ATGTCGAGTGCGCAAATGCCTGTCGGACAAGGCTTCGCGGCGGGCGGCGAAGCGCCGGAGCAACCGCGCGGACCGTCCGT
TCTGGTGGCCGGCGCCAACGGGCTGGTGGGCCGCGCGGTGGTGCATCGGCTCGTTGCGCAGCCGTGGGCGGGCGGCGTGA
CCGCGCTTGTACGGCGGCGCGGGGCCTTGACAGCAGGGCAGGCGGCGCCCGGTCGATTGCGCGAATGCGTGGTCGATTTC
GATCGCCTCGATGCGCCCGAAACCCAGTCTGCGTTTGCCGCCGATATCGTTATCTGCGCGCTTGGCACGACGATCCGGCA
GGCCGGTTCCCAGGCGGCATTCCGGCGCGTTGATGTCGCGTATCCGGCTGAACTGGCGCGGCGCGCGTTTGCCGCTGGCG
CGCATCATTTTCTGCTGGTGAGTGCGTTGGGCGCCGATGCGCGCTCGCGGGTTTTCTACAACCGCTGCAAGGGTGAGGTG
GAGGCCGAAATCTTGTCGATCGGCTTTCCGTCGGTGACGGTTGTCCGGCCTTCGCTGCTGCTCGGCGCGCGCGCAGAATT
TCGGCTGGGTGAACGCATTGCGCAAGGCCTGTCGTGCGCAATCGGATGGATGGTGCCCAAGACGTGGCGGCCGGTGCCGG
CGGAATCGGTTGCGGCGGCGCTCGTCATGGCGGCGCGGGTGGATGCGCCCGGTGTGCGTGTGCTGGAGAACGCGGCGTTG
CTTGCCGCAAAAGACGAACGGCCGGTGGGATGA

Upstream 100 bases:

>100_bases
GGAAACGCACCGAAAGCGCGCAGGCAGCACGGCAGCGAACCGGTTCGTCAGACGCCGTACACTGTGTCCCAGCGCCTGTG
CCAACTTCATGGAGAACATC

Downstream 100 bases:

>100_bases
TCCACCGGCCGTTGTTCGGCCTAGTTTCGTTTCGGGGCTATTTCACGCGATCATTTTTCGATCGGCTTGCCCGTGCGGTC
GTGCATCAGCGCCAGCGCAA

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSSAQMPVGQGFAAGGEAPEQPRGPSVLVAGANGLVGRAVVHRLVAQPWAGGVTALVRRRGALTAGQAAPGRLRECVVDF
DRLDAPETQSAFAADIVICALGTTIRQAGSQAAFRRVDVAYPAELARRAFAAGAHHFLLVSALGADARSRVFYNRCKGEV
EAEILSIGFPSVTVVRPSLLLGARAEFRLGERIAQGLSCAIGWMVPKTWRPVPAESVAAALVMAARVDAPGVRVLENAAL
LAAKDERPVG

Sequences:

>Translated_250_residues
MSSAQMPVGQGFAAGGEAPEQPRGPSVLVAGANGLVGRAVVHRLVAQPWAGGVTALVRRRGALTAGQAAPGRLRECVVDF
DRLDAPETQSAFAADIVICALGTTIRQAGSQAAFRRVDVAYPAELARRAFAAGAHHFLLVSALGADARSRVFYNRCKGEV
EAEILSIGFPSVTVVRPSLLLGARAEFRLGERIAQGLSCAIGWMVPKTWRPVPAESVAAALVMAARVDAPGVRVLENAAL
LAAKDERPVG
>Mature_249_residues
SSAQMPVGQGFAAGGEAPEQPRGPSVLVAGANGLVGRAVVHRLVAQPWAGGVTALVRRRGALTAGQAAPGRLRECVVDFD
RLDAPETQSAFAADIVICALGTTIRQAGSQAAFRRVDVAYPAELARRAFAAGAHHFLLVSALGADARSRVFYNRCKGEVE
AEILSIGFPSVTVVRPSLLLGARAEFRLGERIAQGLSCAIGWMVPKTWRPVPAESVAAALVMAARVDAPGVRVLENAALL
AAKDERPVG

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=223, Percent_Identity=34.9775784753363, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI148728168, Length=223, Percent_Identity=34.9775784753363, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI148728164, Length=223, Percent_Identity=34.9775784753363, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI148728166, Length=223, Percent_Identity=34.9775784753363, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI87082218, Length=220, Percent_Identity=34.5454545454545, Blast_Score=115, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI71983631, Length=218, Percent_Identity=33.0275229357798, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 26065; Mature: 25934

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAQMPVGQGFAAGGEAPEQPRGPSVLVAGANGLVGRAVVHRLVAQPWAGGVTALVRRR
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
GALTAGQAAPGRLRECVVDFDRLDAPETQSAFAADIVICALGTTIRQAGSQAAFRRVDVA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
YPAELARRAFAAGAHHFLLVSALGADARSRVFYNRCKGEVEAEILSIGFPSVTVVRPSLL
CHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHEHHEECCCCCEEEECCHHH
LGARAEFRLGERIAQGLSCAIGWMVPKTWRPVPAESVAAALVMAARVDAPGVRVLENAAL
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHH
LAAKDERPVG
EEECCCCCCC
>Mature Secondary Structure 
SSAQMPVGQGFAAGGEAPEQPRGPSVLVAGANGLVGRAVVHRLVAQPWAGGVTALVRRR
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
GALTAGQAAPGRLRECVVDFDRLDAPETQSAFAADIVICALGTTIRQAGSQAAFRRVDVA
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
YPAELARRAFAAGAHHFLLVSALGADARSRVFYNRCKGEVEAEILSIGFPSVTVVRPSLL
CHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHEHHEECCCCCEEEECCHHH
LGARAEFRLGERIAQGLSCAIGWMVPKTWRPVPAESVAAALVMAARVDAPGVRVLENAAL
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHH
LAAKDERPVG
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]