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The map label for this gene is soxR [H]

Identifier: 187929834

GI number: 187929834

Start: 2876625

End: 2877509

Strand: Reverse

Name: soxR [H]

Synonym: Rpic_2765

Alternate gene names: 187929834

Gene position: 2877509-2876625 (Counterclockwise)

Preceding gene: 187929839

Following gene: 187929833

Centisome position: 72.99

GC content: 67.68

Gene sequence:

>885_bases
GTGAGTACCGTCCGCTTTCTCCGCACCTTTGTCGCCGTGGCGCGCCATGGCTCGTTTGCCGCAGCCGCCGAGCGCGTGGC
ACTCACGCAGGCCGCTGTGAGCCTGCAGATGCGCGCGCTCGAAGCCGAGCTGCGCCGCGACTTGTTCGACCGGTCGGGGC
GGACTGTCACGCTGAATGCGCATGGTCGCGCGCTGCTGCCACAAGCCGAGCACCTGCTGGCGCTCTACGACGCCATGCGC
GTCGGTGACGAACCGCAGACGGCGTTGTCCGGCGCGGTGGCGATTGGTGCGGTGGTGTCGGTGATGGGGTCGCTGGCACA
TGCGGTGGCGGGGCTCAAGCAGGCGCACAAGGGACTGGACGTGAAGCTCATTACCGGCAAATCGGGCGAGCTGGTGGAGC
AGGTGGAAGCGGGCGAGCTGGATGGGGCACTGGTGGTCGAACACCTTGAGCGCCTGCCTGCCAACCTTGTGTGGCACCCG
CTCTATACCGAGCCGCTGGTCGTTGTGGCGGGCCGCCACACACGCGGCCGCGCAGAGGAAGTCCTGCGCACTCACCCGTT
CCTGCGCTTCGACCGCGCGGTACGCACCGGCGCCCTGATCGATCGCGCCCTGCGCAAGACGCACATGGCGGTCAACGAGT
TCATCGAGGTCAATTCCATCGAGGCGATTGTCGAACTGGTGCGCCAGCAGGTAGGGGTGACACTGGTGCCGCGCCTGCGC
CGCGCAAGCTGGGAGAGCGACCCGGCCCTGCGCGTGCTGCCCCTGCCGCCGCAGACGCCGGTGCGCACCGTCGGCATGAT
CGAGCGGAAAGAGCACGTGCGGCACGGTGTGATTCAGGCGGTACTCGATGCGCTCGAAACCACACTTGGTAAATCCAGCG
CCTAG

Upstream 100 bases:

>100_bases
AATGTTTGACGAATGATTATTTGCGGTGCGCTGGATTTAATAAAGTTAAAATTCATTGGATCTTGCTTAAGAAAAACTTG
ATAGTCCGCCGCGCCTTGCC

Downstream 100 bases:

>100_bases
ACTGCAATCACCAAAGCCCGCCCTGGAGGCCCAAAATGGACGCGTTCATCGAACGTTGGCGCAACGAACTAATGCTGCTC
GCCCGCATCCTCATGATGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSTVRFLRTFVAVARHGSFAAAAERVALTQAAVSLQMRALEAELRRDLFDRSGRTVTLNAHGRALLPQAEHLLALYDAMR
VGDEPQTALSGAVAIGAVVSVMGSLAHAVAGLKQAHKGLDVKLITGKSGELVEQVEAGELDGALVVEHLERLPANLVWHP
LYTEPLVVVAGRHTRGRAEEVLRTHPFLRFDRAVRTGALIDRALRKTHMAVNEFIEVNSIEAIVELVRQQVGVTLVPRLR
RASWESDPALRVLPLPPQTPVRTVGMIERKEHVRHGVIQAVLDALETTLGKSSA

Sequences:

>Translated_294_residues
MSTVRFLRTFVAVARHGSFAAAAERVALTQAAVSLQMRALEAELRRDLFDRSGRTVTLNAHGRALLPQAEHLLALYDAMR
VGDEPQTALSGAVAIGAVVSVMGSLAHAVAGLKQAHKGLDVKLITGKSGELVEQVEAGELDGALVVEHLERLPANLVWHP
LYTEPLVVVAGRHTRGRAEEVLRTHPFLRFDRAVRTGALIDRALRKTHMAVNEFIEVNSIEAIVELVRQQVGVTLVPRLR
RASWESDPALRVLPLPPQTPVRTVGMIERKEHVRHGVIQAVLDALETTLGKSSA
>Mature_293_residues
STVRFLRTFVAVARHGSFAAAAERVALTQAAVSLQMRALEAELRRDLFDRSGRTVTLNAHGRALLPQAEHLLALYDAMRV
GDEPQTALSGAVAIGAVVSVMGSLAHAVAGLKQAHKGLDVKLITGKSGELVEQVEAGELDGALVVEHLERLPANLVWHPL
YTEPLVVVAGRHTRGRAEEVLRTHPFLRFDRAVRTGALIDRALRKTHMAVNEFIEVNSIEAIVELVRQQVGVTLVPRLRR
ASWESDPALRVLPLPPQTPVRTVGMIERKEHVRHGVIQAVLDALETTLGKSSA

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=276, Percent_Identity=24.2753623188406, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994962, Length=146, Percent_Identity=33.5616438356164, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=293, Percent_Identity=29.3515358361775, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=271, Percent_Identity=26.5682656826568, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=26.3537906137184, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=28.5123966942149, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=285, Percent_Identity=25.2631578947368, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=280, Percent_Identity=25.3571428571429, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32040; Mature: 31908

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVRFLRTFVAVARHGSFAAAAERVALTQAAVSLQMRALEAELRRDLFDRSGRTVTLNA
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
HGRALLPQAEHLLALYDAMRVGDEPQTALSGAVAIGAVVSVMGSLAHAVAGLKQAHKGLD
CCCEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKLITGKSGELVEQVEAGELDGALVVEHLERLPANLVWHPLYTEPLVVVAGRHTRGRAEE
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCCHHHHH
VLRTHPFLRFDRAVRTGALIDRALRKTHMAVNEFIEVNSIEAIVELVRQQVGVTLVPRLR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RASWESDPALRVLPLPPQTPVRTVGMIERKEHVRHGVIQAVLDALETTLGKSSA
HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STVRFLRTFVAVARHGSFAAAAERVALTQAAVSLQMRALEAELRRDLFDRSGRTVTLNA
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
HGRALLPQAEHLLALYDAMRVGDEPQTALSGAVAIGAVVSVMGSLAHAVAGLKQAHKGLD
CCCEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKLITGKSGELVEQVEAGELDGALVVEHLERLPANLVWHPLYTEPLVVVAGRHTRGRAEE
EEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCCHHHHH
VLRTHPFLRFDRAVRTGALIDRALRKTHMAVNEFIEVNSIEAIVELVRQQVGVTLVPRLR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RASWESDPALRVLPLPPQTPVRTVGMIERKEHVRHGVIQAVLDALETTLGKSSA
HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA