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The map label for this gene is nocR [H]

Identifier: 187929829

GI number: 187929829

Start: 2871483

End: 2872448

Strand: Reverse

Name: nocR [H]

Synonym: Rpic_2760

Alternate gene names: 187929829

Gene position: 2872448-2871483 (Counterclockwise)

Preceding gene: 187929830

Following gene: 187929828

Centisome position: 72.86

GC content: 67.49

Gene sequence:

>966_bases
ATGCGTTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGGTCGGGACCGTCAGCGAGGCGGCGCGCATGCTGAACGT
GTCGCAACCCGTGGTGACGCGCGTGCTGCAGCACACCGAGCTGCAACTCGGTTTCCGCCTGTTCGACCGCACCAAGGGCC
GCCTGCAGCCCACCGCCGAGGCGTTCGAACTGTTCAGCGAAGTCGAGCGGCTGTACCAGGAGGTCGAGCGCGTGCGGCGC
GTGTCGGCCAACTTGCGCCACAAGGGGGCGGGGCGCTTGCGCGTGGCGGCTACGCCCAGCCTGGCGCCGAGCATTCTCGC
GCCCGCCGTGCGGCGTTTCTCGCAGCGGCATCCCGATACGCTGGTGCGTGTGTTCACGCACCACACCGCCGAGATCGTGC
AGGGCTTACTCTCGCAGGACATCGACGTCGGTTTCGCCTTTGCGCCGCCCGTGCATCCGGCCATCAGCACCAAGCCGGTG
GCGCAGGGGCGCATCCTGCTGGCCGCGCCGCGCGCCTGGGTGAGCGGCAAGACCGATGGGCGCGCGCTGCACAAGCTCGT
TGCCGAGAAGCCTTTCATCGGATTGGAAGACCAGATCTCGCTTGGCTCGCTGGTCGGGCAGACATTGGCGCGCGGCGGGC
TGGCGCCGCAGTCGACGTTGGAAGTGCAGACATATTCGTTGGCGCGTTCGCTGGTAGAGGAGTCGCTCGGCGTGACGATG
CTCGATCAGTTCACAGCCGCCACCGGCAGCATGGAGCGCATCGCGCTGTTCGCGCTGGAGCCGGCGCAGACGTTTGATGT
GCGTGCCATGCGTGCCGAGCATCACGCGCCGTCATCGTTGGCCGATAGCCTGGTGCAGTGCTTTGCCGAGGCCGCGCGTG
CGCTGTCCGATGAACTCCCGCAGCGCGTCGAGCCGACAGCATTCGTGCTCAAGCCCACCGAACCTGACAGCGACGCGGCG
GACTAA

Upstream 100 bases:

>100_bases
GCGGAGGGCGCTTCCGCCACACCTGCACCCGCCTAGCCGAAGACCGGCGCCGGATGTCACAATCGGCGCTTCCCTATTCG
GATTGTGAGGACCGGCGGCT

Downstream 100 bases:

>100_bases
CCGACTTGCGCTGACCATTCTCAGGAGACGGATCCATGCGTCGTTTCGCAACTGCAGTGATGTTCGGGCTGGCGCTGGGC
GCCGGCGTCTTCAGCGGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRLRQIEVFRAVMLVGTVSEAARMLNVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFSEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRRFSQRHPDTLVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAISTKPV
AQGRILLAAPRAWVSGKTDGRALHKLVAEKPFIGLEDQISLGSLVGQTLARGGLAPQSTLEVQTYSLARSLVEESLGVTM
LDQFTAATGSMERIALFALEPAQTFDVRAMRAEHHAPSSLADSLVQCFAEAARALSDELPQRVEPTAFVLKPTEPDSDAA
D

Sequences:

>Translated_321_residues
MRLRQIEVFRAVMLVGTVSEAARMLNVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFSEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRRFSQRHPDTLVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAISTKPV
AQGRILLAAPRAWVSGKTDGRALHKLVAEKPFIGLEDQISLGSLVGQTLARGGLAPQSTLEVQTYSLARSLVEESLGVTM
LDQFTAATGSMERIALFALEPAQTFDVRAMRAEHHAPSSLADSLVQCFAEAARALSDELPQRVEPTAFVLKPTEPDSDAA
D
>Mature_321_residues
MRLRQIEVFRAVMLVGTVSEAARMLNVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFSEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRRFSQRHPDTLVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAISTKPV
AQGRILLAAPRAWVSGKTDGRALHKLVAEKPFIGLEDQISLGSLVGQTLARGGLAPQSTLEVQTYSLARSLVEESLGVTM
LDQFTAATGSMERIALFALEPAQTFDVRAMRAEHHAPSSLADSLVQCFAEAARALSDELPQRVEPTAFVLKPTEPDSDAA
D

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=295, Percent_Identity=27.7966101694915, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI157672245, Length=247, Percent_Identity=27.5303643724696, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693105, Length=228, Percent_Identity=25.4385964912281, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=169, Percent_Identity=27.2189349112426, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=30.1369863013699, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=298, Percent_Identity=25.503355704698, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=26.984126984127, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35121; Mature: 35121

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRQIEVFRAVMLVGTVSEAARMLNVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AFELFSEVERLYQEVERVRRVSANLRHKGAGRLRVAATPSLAPSILAPAVRRFSQRHPDT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHH
LVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAISTKPVAQGRILLAAPRAWVSGKTDG
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCH
RALHKLVAEKPFIGLEDQISLGSLVGQTLARGGLAPQSTLEVQTYSLARSLVEESLGVTM
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
LDQFTAATGSMERIALFALEPAQTFDVRAMRAEHHAPSSLADSLVQCFAEAARALSDELP
HHHHHHCCCCHHHEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QRVEPTAFVLKPTEPDSDAAD
HHCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MRLRQIEVFRAVMLVGTVSEAARMLNVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AFELFSEVERLYQEVERVRRVSANLRHKGAGRLRVAATPSLAPSILAPAVRRFSQRHPDT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHH
LVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAISTKPVAQGRILLAAPRAWVSGKTDG
HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCH
RALHKLVAEKPFIGLEDQISLGSLVGQTLARGGLAPQSTLEVQTYSLARSLVEESLGVTM
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
LDQFTAATGSMERIALFALEPAQTFDVRAMRAEHHAPSSLADSLVQCFAEAARALSDELP
HHHHHHCCCCHHHEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QRVEPTAFVLKPTEPDSDAAD
HHCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]