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The map label for this gene is rsmB [H]

Identifier: 187929791

GI number: 187929791

Start: 2834798

End: 2836195

Strand: Reverse

Name: rsmB [H]

Synonym: Rpic_2721

Alternate gene names: 187929791

Gene position: 2836195-2834798 (Counterclockwise)

Preceding gene: 187929792

Following gene: 187929790

Centisome position: 71.94

GC content: 67.74

Gene sequence:

>1398_bases
ATGAGCCAGAATCGTCAGCGTTCGGGCGGCAATGGAAGCGGCGGCGGGTCGGGCAACAAGCGCGCGGGTTCGGGTGGTGG
CGGCTGGTATCGGGCCCCGCAGGGCAAGCCTGCACCCCGCAGCGCGCCGCGCCCCCGCACGGGCGTGCATGGCAGCCACC
TGGAACACCTGGACAAGGTGCTTGCGCGCCTGCTGCACTTTGCGGCTCCCGCCGACATGGTGGTCAGCCAGTATTTCCGT
GAGCACCACGAACTTGGCCACCGCGAGCGCGGCATCATCGCCGAAGCGGCGTTTGCCGTGCTGCGCCGCAAGGTGGAATT
CGGCCAGTTTGCCGAGAGCGGCACGGGCCCGGCGCGTCGTCGCCTGGTGCTGCTGGGCTTGCTGCAGACCGCCGGGCGTG
AGGCCATTGCCCCGTTCCTGAACCCCGTAGAAGCCGAATGGCTGGATCGCTGGGAAAACCGTGACCGCGCCGCGCTGGCG
GCCCGCGTGCGCGCCAACCTGCCCGACTGGCTCTTCGATGCGCTAGTTGCCCAGCACGGTGCGGAGTTCACCGAAGCACT
GGCGCAAGCATGGCTCACGCCGGCGCCGCTGGACTTGCGCGTGAACACGCTCAAGGGCGAACGCGACGCCGTACTCGCCA
CGCTTGCCGAAGCCGGTATTGAAGGCAGTGCAGCGCCGCTCTCGCCGGTGGGCATTCGCCTGGCCGGCAAGCCGGCGTTG
AACAAGCTCGATATCTTCACCAACGGCACGGTCGAGGTGCAGGACGAGGGCAGCCAACTGCTGTGCCAATTGCTGGCACC
CAAGCGCGGCGAGATGGTGGTCGATTTCTGCGCCGGCGCCGGTGGCAAGACCCTGGCGATCGGCGCGGCGATGCGCTCGA
CCGGGCGCCTGTATGCCTTCGACGTATCGGAAAAGCGCTTGTCGAACCTGGGCCCGCGCCTGGCGCGCAGCGGTTTGTCC
AACGTGCATCCCGGTCGCATCGACAGCGAGCACGATGCCAAGGTCAAGCGCCTGGCGGGCAAGATCGATCGTGTGTTGGT
CGACGCGCCGTGCAGCGGCTTGGGCACGCTGCGCCGCAATCCGGACCTGAAGTGGCGCCAGTCCGCACAGGCCGTGGAAG
AAATGTCGGCCAAGCAGTTGTCGATCCTGACATCGGCGGCGCGGCTGCTGAAGCCGGGCGGTCGCCTCGTCTACGCGACC
TGCAGCGTGCTGGCGCGCGAGAACCAGCAGGTGGTTGAGCAGTTCCTGGCCGCGCATGAAGATTTCGTGCTCGTGCCCGC
CGGTGAGGTGCTGGCCGCGCAGAAGATCGCGCTGGAAATGGGGCCTTACCTGGAGCTGTATCCACACACACATCAGACCG
ACGGCTTCTTCGCGGCCGTGCTGGAGCGCCGCGCATGA

Upstream 100 bases:

>100_bases
GCTGGTTCGTGGAAGGGCGGTTGTCGGTCGAACACGGTGTGGTGCGCGTCTCGCCGGATGAATCGCAGCTTGTCATTGGC
GTCAACGCCCGGGAGGCAGC

Downstream 100 bases:

>100_bases
TGGTGCGCCGCTTGGGGTGGCTGCTGGCCGCATGGCTGGCGTTTGCTGCAGGTGGTGTCGCACTGGCCCGCAGCGCGCCG
CCGGTGCAGCCGGCCAAGGG

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSQNRQRSGGNGSGGGSGNKRAGSGGGGWYRAPQGKPAPRSAPRPRTGVHGSHLEHLDKVLARLLHFAAPADMVVSQYFR
EHHELGHRERGIIAEAAFAVLRRKVEFGQFAESGTGPARRRLVLLGLLQTAGREAIAPFLNPVEAEWLDRWENRDRAALA
ARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGERDAVLATLAEAGIEGSAAPLSPVGIRLAGKPAL
NKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLS
NVHPGRIDSEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKPGGRLVYAT
CSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGPYLELYPHTHQTDGFFAAVLERRA

Sequences:

>Translated_465_residues
MSQNRQRSGGNGSGGGSGNKRAGSGGGGWYRAPQGKPAPRSAPRPRTGVHGSHLEHLDKVLARLLHFAAPADMVVSQYFR
EHHELGHRERGIIAEAAFAVLRRKVEFGQFAESGTGPARRRLVLLGLLQTAGREAIAPFLNPVEAEWLDRWENRDRAALA
ARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGERDAVLATLAEAGIEGSAAPLSPVGIRLAGKPAL
NKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLS
NVHPGRIDSEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKPGGRLVYAT
CSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGPYLELYPHTHQTDGFFAAVLERRA
>Mature_464_residues
SQNRQRSGGNGSGGGSGNKRAGSGGGGWYRAPQGKPAPRSAPRPRTGVHGSHLEHLDKVLARLLHFAAPADMVVSQYFRE
HHELGHRERGIIAEAAFAVLRRKVEFGQFAESGTGPARRRLVLLGLLQTAGREAIAPFLNPVEAEWLDRWENRDRAALAA
RVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGERDAVLATLAEAGIEGSAAPLSPVGIRLAGKPALN
KLDIFTNGTVEVQDEGSQLLCQLLAPKRGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLSN
VHPGRIDSEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKPGGRLVYATC
SVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGPYLELYPHTHQTDGFFAAVLERRA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=341, Percent_Identity=29.9120234604106, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI76150623, Length=341, Percent_Identity=29.9120234604106, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI23199998, Length=292, Percent_Identity=29.4520547945205, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI270288816, Length=292, Percent_Identity=29.4520547945205, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI270288818, Length=292, Percent_Identity=29.4520547945205, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI8922322, Length=292, Percent_Identity=29.4520547945205, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI32698918, Length=170, Percent_Identity=31.7647058823529, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI39995082, Length=209, Percent_Identity=30.1435406698565, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI301336155, Length=209, Percent_Identity=30.1435406698565, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI11545785, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI2367212, Length=308, Percent_Identity=33.7662337662338, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87081985, Length=276, Percent_Identity=30.7971014492754, Blast_Score=112, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17536757, Length=299, Percent_Identity=31.7725752508361, Blast_Score=124, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI115534021, Length=221, Percent_Identity=31.6742081447964, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71998419, Length=296, Percent_Identity=29.7297297297297, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25143471, Length=305, Percent_Identity=26.5573770491803, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324268, Length=314, Percent_Identity=29.2993630573248, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6319447, Length=269, Percent_Identity=28.6245353159851, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI22024126, Length=316, Percent_Identity=30.0632911392405, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21356579, Length=219, Percent_Identity=28.310502283105, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355201, Length=283, Percent_Identity=30.0353356890459, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24668781, Length=174, Percent_Identity=32.7586206896552, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21356513, Length=174, Percent_Identity=32.7586206896552, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50130; Mature: 49999

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNRQRSGGNGSGGGSGNKRAGSGGGGWYRAPQGKPAPRSAPRPRTGVHGSHLEHLDKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LARLLHFAAPADMVVSQYFREHHELGHRERGIIAEAAFAVLRRKVEFGQFAESGTGPARR
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RLVLLGLLQTAGREAIAPFLNPVEAEWLDRWENRDRAALAARVRANLPDWLFDALVAQHG
HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHC
AEFTEALAQAWLTPAPLDLRVNTLKGERDAVLATLAEAGIEGSAAPLSPVGIRLAGKPAL
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
NKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAF
CEEEEEECCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHCCCCEEEE
DVSEKRLSNLGPRLARSGLSNVHPGRIDSEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRN
ECCHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCHHHCCC
PDLKWRQSAQAVEEMSAKQLSILTSAARLLKPGGRLVYATCSVLARENQQVVEQFLAAHE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHCCC
DFVLVPAGEVLAAQKIALEMGPYLELYPHTHQTDGFFAAVLERRA
CEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SQNRQRSGGNGSGGGSGNKRAGSGGGGWYRAPQGKPAPRSAPRPRTGVHGSHLEHLDKV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LARLLHFAAPADMVVSQYFREHHELGHRERGIIAEAAFAVLRRKVEFGQFAESGTGPARR
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RLVLLGLLQTAGREAIAPFLNPVEAEWLDRWENRDRAALAARVRANLPDWLFDALVAQHG
HHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHC
AEFTEALAQAWLTPAPLDLRVNTLKGERDAVLATLAEAGIEGSAAPLSPVGIRLAGKPAL
HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC
NKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAF
CEEEEEECCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHCCCCEEEE
DVSEKRLSNLGPRLARSGLSNVHPGRIDSEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRN
ECCHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCHHHCCC
PDLKWRQSAQAVEEMSAKQLSILTSAARLLKPGGRLVYATCSVLARENQQVVEQFLAAHE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHCCC
DFVLVPAGEVLAAQKIALEMGPYLELYPHTHQTDGFFAAVLERRA
CEEEECCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]