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The map label for this gene is sodC2 [H]

Identifier: 187929653

GI number: 187929653

Start: 2691421

End: 2691972

Strand: Reverse

Name: sodC2 [H]

Synonym: Rpic_2581

Alternate gene names: 187929653

Gene position: 2691972-2691421 (Counterclockwise)

Preceding gene: 187929654

Following gene: 187929652

Centisome position: 68.28

GC content: 66.12

Gene sequence:

>552_bases
ATGAAGCAACTCGCGATTGCACTCGCCGCGATCGGCCTGATGGCCGGCTGCGCATCGAACTCAGCGTCGACGGCCAAGGC
GGCTAATGCCGGTGACGGCGCCATGACGGCCTCGGCCGTGCTGGCACCCAAGAGCGGCAGCACCGTGCAAGGCAGCGTGA
AGCTCGCGCAGCAAGGCGACAATCGGGTTGCCATCGCCGTGGATATTTCCGGCCTGCCGGCCAACGGCATGTTCGGTTTC
CACGTGCATGAGAAGGGCGATTGCTCGTCGGCGGATGGCAATAGCGCCGGCGGTCACTTCAACCCGACCGGCCAGCAACA
CGGTGATCCGCGTCAAGGTGCGCACCACGCCGGCGACATTCCGATGCTGCAATCCGATGCCAACGGCAAGGCTGTCGGCT
CGATCGTTCTTTCCGGCGTGACGCTGTCGCCTGGGCCCACCAGCCTGGTCGGCCACGCGCTGATCGTCCACGCAGGCAAG
GACGACTACACGACCCAGCCCACCGGCAATTCCGGCGGGCGCATCGCCTGCGGCGTGATCGTGGCGAACTGA

Upstream 100 bases:

>100_bases
CCGGCGGCCAAAGGGTGAACCGTTGGTTCCAATGTTGCGTGTTCATCATCCGGCAGTACAATCGTCCGCTCCCCGAGTGA
ACCCTGACTGGAGGTGACAC

Downstream 100 bases:

>100_bases
TCGCCCGCACGCGGTACCTGCTCTCGGGCAGGTACCAACCGCAGCATGCGCACGCTCGCCGTGCGCATTTTTATTTGAAC
GAAGACATCGATGCCGCTGC

Product: superoxide dismutase copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKQLAIALAAIGLMAGCASNSASTAKAANAGDGAMTASAVLAPKSGSTVQGSVKLAQQGDNRVAIAVDISGLPANGMFGF
HVHEKGDCSSADGNSAGGHFNPTGQQHGDPRQGAHHAGDIPMLQSDANGKAVGSIVLSGVTLSPGPTSLVGHALIVHAGK
DDYTTQPTGNSGGRIACGVIVAN

Sequences:

>Translated_183_residues
MKQLAIALAAIGLMAGCASNSASTAKAANAGDGAMTASAVLAPKSGSTVQGSVKLAQQGDNRVAIAVDISGLPANGMFGF
HVHEKGDCSSADGNSAGGHFNPTGQQHGDPRQGAHHAGDIPMLQSDANGKAVGSIVLSGVTLSPGPTSLVGHALIVHAGK
DDYTTQPTGNSGGRIACGVIVAN
>Mature_183_residues
MKQLAIALAAIGLMAGCASNSASTAKAANAGDGAMTASAVLAPKSGSTVQGSVKLAQQGDNRVAIAVDISGLPANGMFGF
HVHEKGDCSSADGNSAGGHFNPTGQQHGDPRQGAHHAGDIPMLQSDANGKAVGSIVLSGVTLSPGPTSLVGHALIVHAGK
DDYTTQPTGNSGGRIACGVIVAN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=153, Percent_Identity=39.8692810457516, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI4826665, Length=139, Percent_Identity=37.410071942446, Blast_Score=88, Evalue=4e-18,
Organism=Escherichia coli, GI1787934, Length=194, Percent_Identity=33.5051546391753, Blast_Score=69, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=154, Percent_Identity=40.9090909090909, Blast_Score=95, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71981879, Length=154, Percent_Identity=40.9090909090909, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17554806, Length=139, Percent_Identity=38.1294964028777, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17537871, Length=152, Percent_Identity=35.5263157894737, Blast_Score=70, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322564, Length=149, Percent_Identity=40.2684563758389, Blast_Score=92, Evalue=4e-20,
Organism=Drosophila melanogaster, GI116007680, Length=194, Percent_Identity=32.4742268041237, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI85725006, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI45551081, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24652737, Length=191, Percent_Identity=32.4607329842932, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17136496, Length=138, Percent_Identity=36.9565217391304, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI281363087, Length=113, Percent_Identity=38.0530973451327, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24652342, Length=113, Percent_Identity=38.0530973451327, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17889; Mature: 17889

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLAIALAAIGLMAGCASNSASTAKAANAGDGAMTASAVLAPKSGSTVQGSVKLAQQGD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCC
NRVAIAVDISGLPANGMFGFHVHEKGDCSSADGNSAGGHFNPTGQQHGDPRQGAHHAGDI
CEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PMLQSDANGKAVGSIVLSGVTLSPGPTSLVGHALIVHAGKDDYTTQPTGNSGGRIACGVI
CEEECCCCCCEEEEEEEECEEECCCCCHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE
VAN
EEC
>Mature Secondary Structure
MKQLAIALAAIGLMAGCASNSASTAKAANAGDGAMTASAVLAPKSGSTVQGSVKLAQQGD
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCC
NRVAIAVDISGLPANGMFGFHVHEKGDCSSADGNSAGGHFNPTGQQHGDPRQGAHHAGDI
CEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PMLQSDANGKAVGSIVLSGVTLSPGPTSLVGHALIVHAGKDDYTTQPTGNSGGRIACGVI
CEEECCCCCCEEEEEEEECEEECCCCCHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE
VAN
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]