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The map label for this gene is nirM [H]

Identifier: 187929570

GI number: 187929570

Start: 2606419

End: 2606751

Strand: Reverse

Name: nirM [H]

Synonym: Rpic_2493

Alternate gene names: 187929570

Gene position: 2606751-2606419 (Counterclockwise)

Preceding gene: 187929571

Following gene: 187929564

Centisome position: 66.12

GC content: 65.47

Gene sequence:

>333_bases
GTGATCATGCGCAATGGAGTGTTCTCGCTGCTGGCCGTAGTGTCTGCAGCAATCGGGGCGGCGCCCGCCCACGCCGCGCC
GGACATGCAGGCCCTGGCCGACAAGAGCGGCTGTTTCTCGTGCCACAGCATGCATACCAAGATCGTCGGCCCCGCCTTTG
CCGACGTGGCCGCCAAGTACAAGGGCGATGCCGACGCGCCCGCGAGACTGGCGCAGAAAGTGCGCGAAGGCGGCAAGGGT
GTGTGGGGCCGCATCCCGATGCCCGCGCACTCCAACCTCAAGGAAGACGAAGCGAAGCAATTGGTGGCCTGGGTGTTGAG
TTCAGGCTCCTAG

Upstream 100 bases:

>100_bases
GTTTGGGTGTTCAAGCTGCACAAGAACTGACGTGCGTGGTTGAGCGCTGTGCGCCTTTGCGGCGCACAGCCTCTCGCACA
GCTTCAAGGAGTTTCAGATC

Downstream 100 bases:

>100_bases
GCTTCTACGTTGCTCGCCGGGGAAAAGGAAGAGGGCCGGCATTGTCCGGCCCTTTCTCTTCTCCAGGATTGCGTTCTATG
GTTGCGTGAGCCGGCGCGAA

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome C8; Cytochrome c551 [H]

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MIMRNGVFSLLAVVSAAIGAAPAHAAPDMQALADKSGCFSCHSMHTKIVGPAFADVAAKYKGDADAPARLAQKVREGGKG
VWGRIPMPAHSNLKEDEAKQLVAWVLSSGS

Sequences:

>Translated_110_residues
MIMRNGVFSLLAVVSAAIGAAPAHAAPDMQALADKSGCFSCHSMHTKIVGPAFADVAAKYKGDADAPARLAQKVREGGKG
VWGRIPMPAHSNLKEDEAKQLVAWVLSSGS
>Mature_110_residues
MIMRNGVFSLLAVVSAAIGAAPAHAAPDMQALADKSGCFSCHSMHTKIVGPAFADVAAKYKGDADAPARLAQKVREGGKG
VWGRIPMPAHSNLKEDEAKQLVAWVLSSGS

Specific function: Electron donor for cytochrome cd1 in nitrite and nitrate respiration [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11414; Mature: 11414

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMRNGVFSLLAVVSAAIGAAPAHAAPDMQALADKSGCFSCHSMHTKIVGPAFADVAAKY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHC
KGDADAPARLAQKVREGGKGVWGRIPMPAHSNLKEDEAKQLVAWVLSSGS
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIMRNGVFSLLAVVSAAIGAAPAHAAPDMQALADKSGCFSCHSMHTKIVGPAFADVAAKY
CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHC
KGDADAPARLAQKVREGGKGVWGRIPMPAHSNLKEDEAKQLVAWVLSSGS
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152881; 2155133; 10984043; 4362497; 6283101; 96440; 2174259; 1654086; 8218218 [H]