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The map label for this gene is rfaL [C]

Identifier: 187929480

GI number: 187929480

Start: 2495398

End: 2496678

Strand: Reverse

Name: rfaL [C]

Synonym: Rpic_2401

Alternate gene names: 187929480

Gene position: 2496678-2495398 (Counterclockwise)

Preceding gene: 187929481

Following gene: 187929479

Centisome position: 63.33

GC content: 62.06

Gene sequence:

>1281_bases
ATGAGCAGCTTGATGCAACGAGGCCGGACGCTGATAGCAAGCGCACCGGCGGCGCTGACCGTGTTTGGAATCGCCATCCT
CCCGGCTTTCATGCTGTCTGTGCGCGGCGCTGCCTTCCTGTCGTTTTCGCTGCTGCTGGTCGCCGCGTTCGGGTGGATGC
TGTCCGCGCCTGCGGCGGTCATGAGCCGACTGCGAGCGATGTGGCGTGAACATCGTTGGTTGATTGTGGCGATGGCGGCC
ATGCCGACCGCGATGCTGATCAGTGCGCAGTTGAACCCTGCCGCGCCGCGCAATGTGCCGTTTGCCTATGGGCGGCTCTG
GCTGTTCGGCTTGGCGCTGTTTGCGCTGTTGCAATTGCGGCCTAAGCAGTTGGAGAGCGTGCAGTGGGGCTGCGTTGCGG
GCGCGCTTGCCTCAGCTGTGTGGGCTTATCTCGAATTGCGGGCGGGACGAGTTGGCATGGTCGGGGCGTTCTCCAATGCC
ATTCCGTTTGGCAACCTTTCGCTTCTGATGGCGTTGTTCGCCCTCATGTCAATTGGTTGGACGGAAGATGACGGCTGGGC
CCTGATTGCGCTGCGTCTGTTAGCTGGCTGTGCCGGGCTCTATGCATCGTATCTGTCGCAGGCGCGGGGCGGATGGATTG
CAATCCCCGTACTGCTGTTGATCGCCGTGGCGACGCTGCGGCATGTGAGCTGGAAAAAGCGATTGACGGCCTTGTTGCTG
TTCTTCGTGTTCCTGATTGCCGTATGCGTATCGTCCAGTGTGGTCCGTACCCGCTTCGACCAGGCCATGGAAGACATCCA
CGCCTATCAGGCCGGCCAGACCAACACGTCAGTTGGCATCCGTTTCCAGCTGTGGAAAGCCGCCACGCTGATGTTGACGC
GCCACCCATTAGCCGGGGTGGGGCGAGGCCAATTCGGGCCCGCTCTCAAGGCGATTCACGCCGAGGGCCTGATCACGCAG
GAAGCGACGGCCTTCGAGCATGCCCACAATGAGTTTCTATACAATGGCGCCACGCTTGGCGTGCTGGGCATCGGCGCATT
GCTGGCGTTGTACCTGGTGCCCGCCGCCTACTTTCTGCGCGCCGCGCTGTGCGACGACCGCGTCTTGCGGACGACGGGCG
CGATGGGTCTCACGCTCTGTGTCGGCTTTCTACTGTTTGGGCTGACCGAAGTGATGCTGATCATCGCGCAGACCGTCGTG
TTCTATAGCGTGATGGTGGCCGTGTTCACCGCGCATATTCACCGGCGCCGGCAGCAGCTTGGCGCCGCTCCTGTTTTCTG
A

Upstream 100 bases:

>100_bases
CGCGCTTGGCGAATCCGCGTGAGCACCTGCGCTATGACCCGAGCATCGCTGCGCACATCGACGCGCTCCTGGCGCTTGCA
CCTGGCGCGGGGACGTTGCG

Downstream 100 bases:

>100_bases
GACTGTTTTCGCATGCCTGCATCCAATCGAGCCACGCTCGCCGTCATCATCGTCGCCAAGAACGAAGCCGCCGATATCGG
CGACTGCATCCGCTCGGTGC

Product: O-antigen polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MSSLMQRGRTLIASAPAALTVFGIAILPAFMLSVRGAAFLSFSLLLVAAFGWMLSAPAAVMSRLRAMWREHRWLIVAMAA
MPTAMLISAQLNPAAPRNVPFAYGRLWLFGLALFALLQLRPKQLESVQWGCVAGALASAVWAYLELRAGRVGMVGAFSNA
IPFGNLSLLMALFALMSIGWTEDDGWALIALRLLAGCAGLYASYLSQARGGWIAIPVLLLIAVATLRHVSWKKRLTALLL
FFVFLIAVCVSSSVVRTRFDQAMEDIHAYQAGQTNTSVGIRFQLWKAATLMLTRHPLAGVGRGQFGPALKAIHAEGLITQ
EATAFEHAHNEFLYNGATLGVLGIGALLALYLVPAAYFLRAALCDDRVLRTTGAMGLTLCVGFLLFGLTEVMLIIAQTVV
FYSVMVAVFTAHIHRRRQQLGAAPVF

Sequences:

>Translated_426_residues
MSSLMQRGRTLIASAPAALTVFGIAILPAFMLSVRGAAFLSFSLLLVAAFGWMLSAPAAVMSRLRAMWREHRWLIVAMAA
MPTAMLISAQLNPAAPRNVPFAYGRLWLFGLALFALLQLRPKQLESVQWGCVAGALASAVWAYLELRAGRVGMVGAFSNA
IPFGNLSLLMALFALMSIGWTEDDGWALIALRLLAGCAGLYASYLSQARGGWIAIPVLLLIAVATLRHVSWKKRLTALLL
FFVFLIAVCVSSSVVRTRFDQAMEDIHAYQAGQTNTSVGIRFQLWKAATLMLTRHPLAGVGRGQFGPALKAIHAEGLITQ
EATAFEHAHNEFLYNGATLGVLGIGALLALYLVPAAYFLRAALCDDRVLRTTGAMGLTLCVGFLLFGLTEVMLIIAQTVV
FYSVMVAVFTAHIHRRRQQLGAAPVF
>Mature_425_residues
SSLMQRGRTLIASAPAALTVFGIAILPAFMLSVRGAAFLSFSLLLVAAFGWMLSAPAAVMSRLRAMWREHRWLIVAMAAM
PTAMLISAQLNPAAPRNVPFAYGRLWLFGLALFALLQLRPKQLESVQWGCVAGALASAVWAYLELRAGRVGMVGAFSNAI
PFGNLSLLMALFALMSIGWTEDDGWALIALRLLAGCAGLYASYLSQARGGWIAIPVLLLIAVATLRHVSWKKRLTALLLF
FVFLIAVCVSSSVVRTRFDQAMEDIHAYQAGQTNTSVGIRFQLWKAATLMLTRHPLAGVGRGQFGPALKAIHAEGLITQE
ATAFEHAHNEFLYNGATLGVLGIGALLALYLVPAAYFLRAALCDDRVLRTTGAMGLTLCVGFLLFGLTEVMLIIAQTVVF
YSVMVAVFTAHIHRRRQQLGAAPVF

Specific function: Adds The O-Antigen On The Glucose Group Of Lps. [C]

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790052, Length=164, Percent_Identity=25.609756097561, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007016 [H]

Pfam domain/function: PF04932 Wzy_C [H]

EC number: NA

Molecular weight: Translated: 46099; Mature: 45967

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLMQRGRTLIASAPAALTVFGIAILPAFMLSVRGAAFLSFSLLLVAAFGWMLSAPAAV
CCHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
MSRLRAMWREHRWLIVAMAAMPTAMLISAQLNPAAPRNVPFAYGRLWLFGLALFALLQLR
HHHHHHHHHHCCHHEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PKQLESVQWGCVAGALASAVWAYLELRAGRVGMVGAFSNAIPFGNLSLLMALFALMSIGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHCCC
TEDDGWALIALRLLAGCAGLYASYLSQARGGWIAIPVLLLIAVATLRHVSWKKRLTALLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFVFLIAVCVSSSVVRTRFDQAMEDIHAYQAGQTNTSVGIRFQLWKAATLMLTRHPLAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCC
GRGQFGPALKAIHAEGLITQEATAFEHAHNEFLYNGATLGVLGIGALLALYLVPAAYFLR
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AALCDDRVLRTTGAMGLTLCVGFLLFGLTEVMLIIAQTVVFYSVMVAVFTAHIHRRRQQL
HHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAAPVF
CCCCCC
>Mature Secondary Structure 
SSLMQRGRTLIASAPAALTVFGIAILPAFMLSVRGAAFLSFSLLLVAAFGWMLSAPAAV
CHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
MSRLRAMWREHRWLIVAMAAMPTAMLISAQLNPAAPRNVPFAYGRLWLFGLALFALLQLR
HHHHHHHHHHCCHHEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PKQLESVQWGCVAGALASAVWAYLELRAGRVGMVGAFSNAIPFGNLSLLMALFALMSIGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHCCC
TEDDGWALIALRLLAGCAGLYASYLSQARGGWIAIPVLLLIAVATLRHVSWKKRLTALLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFVFLIAVCVSSSVVRTRFDQAMEDIHAYQAGQTNTSVGIRFQLWKAATLMLTRHPLAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCC
GRGQFGPALKAIHAEGLITQEATAFEHAHNEFLYNGATLGVLGIGALLALYLVPAAYFLR
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AALCDDRVLRTTGAMGLTLCVGFLLFGLTEVMLIIAQTVVFYSVMVAVFTAHIHRRRQQL
HHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GAAPVF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]