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The map label for this gene is greB [H]

Identifier: 187929352

GI number: 187929352

Start: 2392509

End: 2393072

Strand: Reverse

Name: greB [H]

Synonym: Rpic_2273

Alternate gene names: 187929352

Gene position: 2393072-2392509 (Counterclockwise)

Preceding gene: 187929353

Following gene: 187929350

Centisome position: 60.7

GC content: 62.23

Gene sequence:

>564_bases
ATGAACAAGGCTTTCGTCCGGGAAGATTCCGGCGACGATGAAGACGATCTGCCCGAGGGCGCTGCGCCCTTGCCGCCGGG
TTCCAAGAACTACATCACGCCGGCGGGCTACGAGCGCCTGCGCACCGAGCTGATGCACCTGATCGACACCGAGCGGCCCG
AAGTGGTTGGCATCGTGTCGTGGGCGGCATCCAATGGTGATCGCTCCGAAAACGGCGACTACCTTTACGGCAAGAAGCGC
CTGCGTGAGATCGATCGTCGCATCCGCTTTCTCACGCGCCGTATCGAGAAGGCCGAGGTTGTCGACGCCAGCTTGCAGGG
CGACAACGATCAGATCTTCTTTGGCGCGACGGTTACCTACGCCAACCAGCGTGGTGAAGAGAAGACGATCACCATCGTCG
GCATGGACGAGGTGGATCTGGACATCGGGCACGTGAGCTGGATCTCGCCGATTGCGCGTGCGCTCATCAAGGCGCGCGTG
GGCGATACGGTGCCGCTGCGCACGCCCACAGGTGTCGAGCAGATCGACATCCTCGAAGTCAAATATCCGCCGCGCACCGC
CTGA

Upstream 100 bases:

>100_bases
TACAGAGATTTTTTGCCGTGTGAACCCCCTTCTTCACTTTTTCTTCGAGAGGGGCCAACTTTCTATAATGGAGCCTTGAT
CCACCGTGGCTTCTTCCATC

Downstream 100 bases:

>100_bases
GCGTTGTGCTCAGGCCGGGTGCCCCAGGCAGTAAGCACCGAAGGCGATGACAGAGCAGGCCGACAGGCGCCGCGCCGTGA
GCGACTCCTTCAGGAACAGC

Product: transcription elongation factor GreB

Products: NA

Alternate protein names: Transcript cleavage factor greB [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNKAFVREDSGDDEDDLPEGAAPLPPGSKNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKR
LREIDRRIRFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQRGEEKTITIVGMDEVDLDIGHVSWISPIARALIKARV
GDTVPLRTPTGVEQIDILEVKYPPRTA

Sequences:

>Translated_187_residues
MNKAFVREDSGDDEDDLPEGAAPLPPGSKNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKR
LREIDRRIRFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQRGEEKTITIVGMDEVDLDIGHVSWISPIARALIKARV
GDTVPLRTPTGVEQIDILEVKYPPRTA
>Mature_187_residues
MNKAFVREDSGDDEDDLPEGAAPLPPGSKNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKR
LREIDRRIRFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQRGEEKTITIVGMDEVDLDIGHVSWISPIARALIKARV
GDTVPLRTPTGVEQIDILEVKYPPRTA

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI87082261, Length=140, Percent_Identity=50.7142857142857, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI87082225, Length=152, Percent_Identity=35.5263157894737, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR001437
- InterPro:   IPR022691
- InterPro:   IPR006358 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 20912; Mature: 20912

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00829 GREAB_1 ; PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAFVREDSGDDEDDLPEGAAPLPPGSKNYITPAGYERLRTELMHLIDTERPEVVGIVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
WAASNGDRSENGDYLYGKKRLREIDRRIRFLTRRIEKAEVVDASLQGDNDQIFFGATVTY
EECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
ANQRGEEKTITIVGMDEVDLDIGHVSWISPIARALIKARVGDTVPLRTPTGVEQIDILEV
CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
KYPPRTA
CCCCCCC
>Mature Secondary Structure
MNKAFVREDSGDDEDDLPEGAAPLPPGSKNYITPAGYERLRTELMHLIDTERPEVVGIVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
WAASNGDRSENGDYLYGKKRLREIDRRIRFLTRRIEKAEVVDASLQGDNDQIFFGATVTY
EECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
ANQRGEEKTITIVGMDEVDLDIGHVSWISPIARALIKARVGDTVPLRTPTGVEQIDILEV
CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEE
KYPPRTA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]