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The map label for this gene is nodJ [H]

Identifier: 187929208

GI number: 187929208

Start: 2239502

End: 2240323

Strand: Direct

Name: nodJ [H]

Synonym: Rpic_2129

Alternate gene names: 187929208

Gene position: 2239502-2240323 (Clockwise)

Preceding gene: 187929207

Following gene: 187929232

Centisome position: 56.8

GC content: 64.84

Gene sequence:

>822_bases
ATGTCCACTGAAACCGCACTCACTCCAACGCTGCAGCGGGCCTTTCCGCAGCCGCTGCTGCCGCTCAACTTCCGCAACTG
GCAGTACGTCTGGCTCCGCAACTTCATGGTGTGGCGCAAGCTGGCCATTCCGTCGATGGCCGGCAACCTCGCCGACCCGA
TGATCTATCTGTTCGGGCTCGGGCTCGGCCTTGGCCTGCTGGTCGGGCGCGTCGACGGCGTGTCGTACATCGCATTCCTG
GCGGCCGGCACGGTGGCGTCCAGCACAATGATGTCGGCGAGCTTCGAAGCGATGTATTCCGCGTTCTCGCGCATGCACGT
GCAACGTACATGGGAGGCGATCCTGTACGCACCGCTCAGCCTGGGCGACGTGGTCCTTGGTGAGCTGTTCTGGGCCGCCA
GCAAGTCGGTGCTCTCGGGCCTGGCGATCATGCTGGTCGCGGGCGCACTCGGCTATGCGTCGATGCCGCAGGCACTGCTG
GCCCTGCCCGTCATCGTCTTGACCGGCTTCACCTTTGCCTGCCTGGCGATGAACATGACGGCGCTTGCGCCCAACTACGA
CTTCTTCATGTTCTACCAGACGCTGGTGATCACGCCGATGATGCTGCTCTCGGGCGTGTTCTTCCCGCTATCGCAACTGC
CGGCGCCCGTGCGCGCGGCGACGAGCGTACTGCCATTGCCGCACGCGGTGGATCTGATCCGCCCGCTCATGCTGGGCCGC
ACGCCCGAGAACATCCTGCTGCACCTGGGCGTACTGCTGCTGTACGCCGTTGCCGCGCTGCTCTCGTGTCTCTGGCTGCT
GCGCCGTCGCATGCTCAAGTAG

Upstream 100 bases:

>100_bases
ACACCATGCCCGGCCTGCGCTATCTGCACCGCCCGGCCAATCTCGAAGATGTGTTCCTGCGCCTGACTGGCCGCGAAATG
CGCGACTGAGAGAACCATCC

Downstream 100 bases:

>100_bases
CGCGATCCCGACGTCCAACAAAAAAGCCCGTCGCGATGACGGGCTTTCTTTTACGGCGCTCGAGAATTACTCGTTCACGG
CGGAGCGCTGCAGATGCAGT

Product: NodJ family ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSTETALTPTLQRAFPQPLLPLNFRNWQYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGLGLGLLVGRVDGVSYIAFL
AAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLSLGDVVLGELFWAASKSVLSGLAIMLVAGALGYASMPQALL
ALPVIVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPVRAATSVLPLPHAVDLIRPLMLGR
TPENILLHLGVLLLYAVAALLSCLWLLRRRMLK

Sequences:

>Translated_273_residues
MSTETALTPTLQRAFPQPLLPLNFRNWQYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGLGLGLLVGRVDGVSYIAFL
AAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLSLGDVVLGELFWAASKSVLSGLAIMLVAGALGYASMPQALL
ALPVIVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPVRAATSVLPLPHAVDLIRPLMLGR
TPENILLHLGVLLLYAVAALLSCLWLLRRRMLK
>Mature_272_residues
STETALTPTLQRAFPQPLLPLNFRNWQYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGLGLGLLVGRVDGVSYIAFLA
AGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLSLGDVVLGELFWAASKSVLSGLAIMLVAGALGYASMPQALLA
LPVIVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPVRAATSVLPLPHAVDLIRPLMLGRT
PENILLHLGVLLLYAVAALLSCLWLLRRRMLK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29923; Mature: 29792

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STETALTPTLQRAFPQPLLPLNFRNWQYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGL
CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
GLGLGLLVGRVDGVSYIAFLAAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LGDVVLGELFWAASKSVLSGLAIMLVAGALGYASMPQALLALPVIVLTGFTFACLAMNMT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPVRAATSVLPLPHAVDLIRPLMLGR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCC
TPENILLHLGVLLLYAVAALLSCLWLLRRRMLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]