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The map label for this gene is ddpC [H]

Identifier: 187929163

GI number: 187929163

Start: 2193438

End: 2194367

Strand: Direct

Name: ddpC [H]

Synonym: Rpic_2084

Alternate gene names: 187929163

Gene position: 2193438-2194367 (Clockwise)

Preceding gene: 187929162

Following gene: 187929164

Centisome position: 55.63

GC content: 65.91

Gene sequence:

>930_bases
ATGATGAATACAACTCCGCAACCCACCACCGCAGCCGCGGTTGCCGCCCCGCGCAAGCAATCGCCGTGGCGCCGCGTGGT
GTCCGATTTTCTGGCATCCCAGACCGCCGTCTTTGGGCTCGCCGTGGTCGTGATCCTGATGCTGGCCGCGCTGGCCGCAC
CGTGGATCACGCCGCAGAACCCATACGACCTGATGCAGCTCGACGTGCTCGACTCGCGTCTGCCGCCAGGTTCGCCGAAT
GGCTTGGGGACGTTCACGTACTGGCTCGGCACCGATGGCCAGGGGCGTGACCTGTACTCCGGCATCCTCTATGGCTTGCG
CATCAGCCTGGGCGTGGGGATCGGTTCGGCAGCCGTGGCGGCGGTGATCGGCACGCTGCTCGGCCTCATTGCGGCGTATG
CCGGTGGCCGCGTCGACAGCATCATCATGCGCACGGTCGATCTGCTGCTGTCGTTCCCGTCGGTGCTGGTGGCCATGATG
ATCCTCGCCTATCTGGGCAAGAGCATCACCAATGTCGTGCTGACGCTGGTGGTGCTGGAGTGGGCGTATTACGCGCGGAC
GGTGCGCGGGCAAGCGCTGGTCGAGCGTCGCCGCGAATACGTGGAAGCCGCCCGCTCGCTCGCCCTGCCCGGCTGGCGCA
TCGCGCTCAAGCACATCCTGCCGAACTGCCTGCCGCCGCTGATCGTCGTGGGCACGCTGCAGGTGGCGCGCGCGATCACG
CTGGAAGCCACGCTGTCGTTCCTGGGCCTGGGCGTGCCGATTACCGAGCCGTCTCTGGGCCTGCTGATTTCCAACGGATA
CCAATACATGCTGTCTGGCCAGTACTGGATCAGTTTCTATCCGGGCATCGCGCTGTTGCTGGCGCTGGTGGCCATCAACC
TGGTGGGCGACCGCCTGCGCGAAGTGCTGAACCCGAGGGCGCAACGATGA

Upstream 100 bases:

>100_bases
TCGTTGTGGTGTGCCTGTTCGTGTCGCTCAACCTGATCGTCGACATCCTGTATCGGCTGCTGGACCCGCGCGTGCGTGCG
GCGGACAGCGCGGAGGCTGC

Downstream 100 bases:

>100_bases
CGGCGTCCACCAACGCGACCACACTCGAAGTCCGCAACCTGCGCACGCATTTCTTCACGCGTGAAGGCGTGCTGCCGGCG
GTGGACGATGTGTCGTTCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MMNTTPQPTTAAAVAAPRKQSPWRRVVSDFLASQTAVFGLAVVVILMLAALAAPWITPQNPYDLMQLDVLDSRLPPGSPN
GLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAGGRVDSIIMRTVDLLLSFPSVLVAMM
ILAYLGKSITNVVLTLVVLEWAYYARTVRGQALVERRREYVEAARSLALPGWRIALKHILPNCLPPLIVVGTLQVARAIT
LEATLSFLGLGVPITEPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLREVLNPRAQR

Sequences:

>Translated_309_residues
MMNTTPQPTTAAAVAAPRKQSPWRRVVSDFLASQTAVFGLAVVVILMLAALAAPWITPQNPYDLMQLDVLDSRLPPGSPN
GLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAGGRVDSIIMRTVDLLLSFPSVLVAMM
ILAYLGKSITNVVLTLVVLEWAYYARTVRGQALVERRREYVEAARSLALPGWRIALKHILPNCLPPLIVVGTLQVARAIT
LEATLSFLGLGVPITEPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLREVLNPRAQR
>Mature_309_residues
MMNTTPQPTTAAAVAAPRKQSPWRRVVSDFLASQTAVFGLAVVVILMLAALAAPWITPQNPYDLMQLDVLDSRLPPGSPN
GLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAGGRVDSIIMRTVDLLLSFPSVLVAMM
ILAYLGKSITNVVLTLVVLEWAYYARTVRGQALVERRREYVEAARSLALPGWRIALKHILPNCLPPLIVVGTLQVARAIT
LEATLSFLGLGVPITEPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLREVLNPRAQR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=293, Percent_Identity=37.542662116041, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1787054, Length=289, Percent_Identity=33.5640138408304, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789964, Length=303, Percent_Identity=38.9438943894389, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789889, Length=246, Percent_Identity=36.1788617886179, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787498, Length=289, Percent_Identity=34.9480968858132, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788505, Length=232, Percent_Identity=28.8793103448276, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787549, Length=284, Percent_Identity=26.7605633802817, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33257; Mature: 33257

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNTTPQPTTAAAVAAPRKQSPWRRVVSDFLASQTAVFGLAVVVILMLAALAAPWITPQN
CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PYDLMQLDVLDSRLPPGSPNGLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVA
CHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
AVIGTLLGLIAAYAGGRVDSIIMRTVDLLLSFPSVLVAMMILAYLGKSITNVVLTLVVLE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAYYARTVRGQALVERRREYVEAARSLALPGWRIALKHILPNCLPPLIVVGTLQVARAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
LEATLSFLGLGVPITEPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLR
HHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVLNPRAQR
HHHCCCCCC
>Mature Secondary Structure
MMNTTPQPTTAAAVAAPRKQSPWRRVVSDFLASQTAVFGLAVVVILMLAALAAPWITPQN
CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PYDLMQLDVLDSRLPPGSPNGLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVA
CHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
AVIGTLLGLIAAYAGGRVDSIIMRTVDLLLSFPSVLVAMMILAYLGKSITNVVLTLVVLE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAYYARTVRGQALVERRREYVEAARSLALPGWRIALKHILPNCLPPLIVVGTLQVARAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
LEATLSFLGLGVPITEPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLR
HHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
EVLNPRAQR
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]