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The map label for this gene is 187929138

Identifier: 187929138

GI number: 187929138

Start: 2170009

End: 2171064

Strand: Direct

Name: 187929138

Synonym: Rpic_2059

Alternate gene names: NA

Gene position: 2170009-2171064 (Clockwise)

Preceding gene: 187929137

Following gene: 187929141

Centisome position: 55.04

GC content: 64.2

Gene sequence:

>1056_bases
ATGCATCAATTCACACGGCACCTGCTAGCGGCGGCTGCCGTAAGCCTGGTTGCCCCGGTGGCGCTGGCGCAGTCGAGCGT
CACGCTCTATGGCCTGGTCGACACGGGCATCGAATACGTCAGCCATGCCGGCGCCAACGGCTCGGGGAGCGTGTATCGCG
TGTCGCCTGGCAATGTCACCGGTTCGCGCTGGGGCTTACGCGGCAAGGAAGACCTGGGTGGTGGCCTGAATGCGGTGTTC
GTGCTGGAAAGCGGTTTCAACAGCGACACGGGTGTGTCCGGCCAGGGTGGCCGCCTGTTCGGGCGGCAGGCTTACGTGGG
CATCGAAGGCCGGTTCGGCCTGATCTCGTTCGGGCGGCAGATCAACACGTTCTACGACCTGTTCGTGCCGTTCGACCCCG
TGCGCTATACGAGCTACAGCCTGCTCTCGCAGGACAGCCAGTTTGCCAACCGCGCCGACAACGCCATCAAGTACACCGGC
AACTTCGGCAACCTGACACTCACGGCCATGTACAGCGCCGGGTACGACGCCACGATCGCCAACGGTGGTGAAGTCCCAGG
CGCGCCGCGCGTTGGGCAGGAGATCAGCACTGGCGTGACCTACACGATCGGGCAGATCGGCATGATCGCCGCGTACGACC
AGCGGCGCGGCACCTCGCTTGCCACGCAGGACATCATTGAGCGCCGCTACGCAACGGGCCTCGTGTGGAACTCGGGGCCC
TATACGGTGACGGCAGGCTATCGCTACCAGCAAGGCGCGCTGACGCAGCCGTCGCTGCACGCCAACCTGTATTGGCTGGG
CGGGTCTTATACCATCACGCCGGCGCTGACGTTGCGTGCGGGGGTATATCGCAGCACGGTGCGTAACTCGCCCAACGGCG
CAACGAGCTATGCGGTGTCGACGCTCTACAGCCTGTCCAAGCGCACCGACCTGTATGTCAACGCCTCATACATGAACAAC
AAGGGGGCATCCACACTGGGCGTGGTCAATGCGACGACGGCAGCTCCGGGTGTCAGCCAGACGGGCGTGGTGGCCGGCAT
CAAGCACATCTTCTAA

Upstream 100 bases:

>100_bases
TTTTTCTGCTCCACGCAGCCCAGCGCTGCGTGGGGATTCAACACGTCCGCCAACAAGCCGCGTGCTTGCCGGACATCACA
ACAACCAAGATGGAGGAGAT

Downstream 100 bases:

>100_bases
GCGTGTGGAGGCTGCGGTCGATTCGGCCGCAGCCTCATGAAAAAAGGGCAGCTTCGGCTGCCCTTTCCTATTGCGCACTC
CGGTGCCTCAGGCGGCGTGT

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MHQFTRHLLAAAAVSLVAPVALAQSSVTLYGLVDTGIEYVSHAGANGSGSVYRVSPGNVTGSRWGLRGKEDLGGGLNAVF
VLESGFNSDTGVSGQGGRLFGRQAYVGIEGRFGLISFGRQINTFYDLFVPFDPVRYTSYSLLSQDSQFANRADNAIKYTG
NFGNLTLTAMYSAGYDATIANGGEVPGAPRVGQEISTGVTYTIGQIGMIAAYDQRRGTSLATQDIIERRYATGLVWNSGP
YTVTAGYRYQQGALTQPSLHANLYWLGGSYTITPALTLRAGVYRSTVRNSPNGATSYAVSTLYSLSKRTDLYVNASYMNN
KGASTLGVVNATTAAPGVSQTGVVAGIKHIF

Sequences:

>Translated_351_residues
MHQFTRHLLAAAAVSLVAPVALAQSSVTLYGLVDTGIEYVSHAGANGSGSVYRVSPGNVTGSRWGLRGKEDLGGGLNAVF
VLESGFNSDTGVSGQGGRLFGRQAYVGIEGRFGLISFGRQINTFYDLFVPFDPVRYTSYSLLSQDSQFANRADNAIKYTG
NFGNLTLTAMYSAGYDATIANGGEVPGAPRVGQEISTGVTYTIGQIGMIAAYDQRRGTSLATQDIIERRYATGLVWNSGP
YTVTAGYRYQQGALTQPSLHANLYWLGGSYTITPALTLRAGVYRSTVRNSPNGATSYAVSTLYSLSKRTDLYVNASYMNN
KGASTLGVVNATTAAPGVSQTGVVAGIKHIF
>Mature_351_residues
MHQFTRHLLAAAAVSLVAPVALAQSSVTLYGLVDTGIEYVSHAGANGSGSVYRVSPGNVTGSRWGLRGKEDLGGGLNAVF
VLESGFNSDTGVSGQGGRLFGRQAYVGIEGRFGLISFGRQINTFYDLFVPFDPVRYTSYSLLSQDSQFANRADNAIKYTG
NFGNLTLTAMYSAGYDATIANGGEVPGAPRVGQEISTGVTYTIGQIGMIAAYDQRRGTSLATQDIIERRYATGLVWNSGP
YTVTAGYRYQQGALTQPSLHANLYWLGGSYTITPALTLRAGVYRSTVRNSPNGATSYAVSTLYSLSKRTDLYVNASYMNN
KGASTLGVVNATTAAPGVSQTGVVAGIKHIF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37156; Mature: 37156

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQFTRHLLAAAAVSLVAPVALAQSSVTLYGLVDTGIEYVSHAGANGSGSVYRVSPGNVT
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCC
GSRWGLRGKEDLGGGLNAVFVLESGFNSDTGVSGQGGRLFGRQAYVGIEGRFGLISFGRQ
CCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCCEEHHHHCCH
INTFYDLFVPFDPVRYTSYSLLSQDSQFANRADNAIKYTGNFGNLTLTAMYSAGYDATIA
HCCEEEEECCCCCCHHHHHHHHHCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCEEEC
NGGEVPGAPRVGQEISTGVTYTIGQIGMIAAYDQRRGTSLATQDIIERRYATGLVWNSGP
CCCCCCCCCCCCCHHHCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCC
YTVTAGYRYQQGALTQPSLHANLYWLGGSYTITPALTLRAGVYRSTVRNSPNGATSYAVS
EEEEECCEECCCCCCCCCCEEEEEEECCCEEECHHEEHHHHHHHHHHCCCCCCHHHHHHH
TLYSLSKRTDLYVNASYMNNKGASTLGVVNATTAAPGVSQTGVVAGIKHIF
HHHHHHCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MHQFTRHLLAAAAVSLVAPVALAQSSVTLYGLVDTGIEYVSHAGANGSGSVYRVSPGNVT
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCC
GSRWGLRGKEDLGGGLNAVFVLESGFNSDTGVSGQGGRLFGRQAYVGIEGRFGLISFGRQ
CCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEEECCCEEHHHHCCH
INTFYDLFVPFDPVRYTSYSLLSQDSQFANRADNAIKYTGNFGNLTLTAMYSAGYDATIA
HCCEEEEECCCCCCHHHHHHHHHCCHHHHHHCCCEEEEECCCCCEEEEEEEECCCCEEEC
NGGEVPGAPRVGQEISTGVTYTIGQIGMIAAYDQRRGTSLATQDIIERRYATGLVWNSGP
CCCCCCCCCCCCCHHHCCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCC
YTVTAGYRYQQGALTQPSLHANLYWLGGSYTITPALTLRAGVYRSTVRNSPNGATSYAVS
EEEEECCEECCCCCCCCCCEEEEEEECCCEEECHHEEHHHHHHHHHHCCCCCCHHHHHHH
TLYSLSKRTDLYVNASYMNNKGASTLGVVNATTAAPGVSQTGVVAGIKHIF
HHHHHHCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]