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The map label for this gene is lpsJ [H]

Identifier: 187929062

GI number: 187929062

Start: 2091961

End: 2092596

Strand: Reverse

Name: lpsJ [H]

Synonym: Rpic_1982

Alternate gene names: 187929062

Gene position: 2092596-2091961 (Counterclockwise)

Preceding gene: 187929063

Following gene: 187929061

Centisome position: 53.08

GC content: 60.85

Gene sequence:

>636_bases
ATGGCCTGGACACAAGACCAAATGGCGGCGCGCGCTGCCCAGGAGTTGCAAGACGGTTTCTACGTCAACCTCGGCATCGG
TATCCCGACGCTGGTTGCCAACCACACCGGCGACAAGGAAGTCTGGCTGCAAAGCGAAAACGGCATGCTGGGCATCGGTC
CGTTTCCCATGGAAGACGAAGTGGATGCCGACCTGATCAACGCAGGCAAGCAGACCGTGACCACGCTGCCCGGCAGCGCC
ATCTTCGGCAGCGATCAGAGCTTTGCGATGATTCGCGGCGGCAAGATCAACCTGTCGATTCTCGGTGCGATGCAGGTGAG
CGAGACGGGCGACCTGGCCAACTGGATGATCCCCGGCAAGATGGTCAAGGGCATGGGTGGCGCGATGGACCTCGTGGCCG
GCGTCAAGCGGGTGATCGTTCTGATGGAACACACCGCCAAGAAAAAGGACGGCACCGAAGACATGAAGATCCTGCCCAAG
TGCACGTTGCCGCTGACGGGTGTGGGCGTGGTGGATCGCATCATTACGGACCTCGGCGTGATCGACGTGACCGAGCAGGG
ACTGAAGCTGATCGAAACCGCGCCGGGCGTTTCCCGCGAAGAGATCCAGGCCAAGACTGGCGTCAACCTGTTGTAA

Upstream 100 bases:

>100_bases
CATCTGCCCGGCATCTATGTGCACCGCATCGTGCTCAATGCCACGCCCGAGAAGCGCATCGAGAAGCGCACCATCCGAGT
AGCCAACTAAGGAGACCGAC

Downstream 100 bases:

>100_bases
TCGCTGACCTCCGGAGATACGCATGCTGCAAGGAAAAACCGCCCTCGTCACGGGCTCGACCAGCGGGATTGGTCTGGGTA
TTGCCTGTTCGCTGGCCGCG

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAWTQDQMAARAAQELQDGFYVNLGIGIPTLVANHTGDKEVWLQSENGMLGIGPFPMEDEVDADLINAGKQTVTTLPGSA
IFGSDQSFAMIRGGKINLSILGAMQVSETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGTEDMKILPK
CTLPLTGVGVVDRIITDLGVIDVTEQGLKLIETAPGVSREEIQAKTGVNLL

Sequences:

>Translated_211_residues
MAWTQDQMAARAAQELQDGFYVNLGIGIPTLVANHTGDKEVWLQSENGMLGIGPFPMEDEVDADLINAGKQTVTTLPGSA
IFGSDQSFAMIRGGKINLSILGAMQVSETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGTEDMKILPK
CTLPLTGVGVVDRIITDLGVIDVTEQGLKLIETAPGVSREEIQAKTGVNLL
>Mature_210_residues
AWTQDQMAARAAQELQDGFYVNLGIGIPTLVANHTGDKEVWLQSENGMLGIGPFPMEDEVDADLINAGKQTVTTLPGSAI
FGSDQSFAMIRGGKINLSILGAMQVSETGDLANWMIPGKMVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGTEDMKILPKC
TLPLTGVGVVDRIITDLGVIDVTEQGLKLIETAPGVSREEIQAKTGVNLL

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=209, Percent_Identity=57.8947368421053, Blast_Score=235, Evalue=2e-62,
Organism=Homo sapiens, GI11545841, Length=207, Percent_Identity=59.9033816425121, Blast_Score=228, Evalue=4e-60,
Organism=Escherichia coli, GI1788552, Length=203, Percent_Identity=49.7536945812808, Blast_Score=186, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17531517, Length=210, Percent_Identity=54.7619047619048, Blast_Score=218, Evalue=1e-57,
Organism=Drosophila melanogaster, GI21358325, Length=209, Percent_Identity=57.8947368421053, Blast_Score=229, Evalue=1e-60,
Organism=Drosophila melanogaster, GI24655794, Length=209, Percent_Identity=57.8947368421053, Blast_Score=228, Evalue=2e-60,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22421; Mature: 22290

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTQDQMAARAAQELQDGFYVNLGIGIPTLVANHTGDKEVWLQSENGMLGIGPFPMEDE
CCCCHHHHHHHHHHHHHCCEEEEECCCCCHHEECCCCCCEEEEECCCCEEEECCCCCCCC
VDADLINAGKQTVTTLPGSAIFGSDQSFAMIRGGKINLSILGAMQVSETGDLANWMIPGK
CCHHHHHCCCCEEEECCCCEEECCCCCEEEEECCEEEEEEEEEEEECCCCCCHHCCCCHH
MVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGTEDMKILPKCTLPLTGVGVVDRIITDLGV
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCC
IDVTEQGLKLIETAPGVSREEIQAKTGVNLL
EEECHHHHHHHHCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
AWTQDQMAARAAQELQDGFYVNLGIGIPTLVANHTGDKEVWLQSENGMLGIGPFPMEDE
CCCHHHHHHHHHHHHHCCEEEEECCCCCHHEECCCCCCEEEEECCCCEEEECCCCCCCC
VDADLINAGKQTVTTLPGSAIFGSDQSFAMIRGGKINLSILGAMQVSETGDLANWMIPGK
CCHHHHHCCCCEEEECCCCEEECCCCCEEEEECCEEEEEEEEEEEECCCCCCHHCCCCHH
MVKGMGGAMDLVAGVKRVIVLMEHTAKKKDGTEDMKILPKCTLPLTGVGVVDRIITDLGV
HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCC
IDVTEQGLKLIETAPGVSREEIQAKTGVNLL
EEECHHHHHHHHCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]