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The map label for this gene is ybbI [C]

Identifier: 187929048

GI number: 187929048

Start: 2077915

End: 2078370

Strand: Reverse

Name: ybbI [C]

Synonym: Rpic_1968

Alternate gene names: 187929048

Gene position: 2078370-2077915 (Counterclockwise)

Preceding gene: 187929049

Following gene: 187929046

Centisome position: 52.72

GC content: 64.69

Gene sequence:

>456_bases
ATGGCTGAGCGCGACCCGGCTCGATTGCTGATCGGTGCCCTGGCTGAACGCACGGGCCGCAGCATTCATACGATTCGTTG
GTACGAGACGCAGGGGTTGATTCCTGGCGTTGCGCGCGATGCGGCGGTCCGACGTGTGTATACCGAGCAGCACGTCAACT
GGCTCGAGTTGATGGAGCGCCTGCGCAGTTCGGGGATGTCGGTCGCGCAGATGCGCGAATATACGGCGCTGGTGTGCGAG
GGCCGCAGCGCCCTGAAAGCTCGGCATGCGCTGCTGGTTGCACACCGCGCGCAGGTGACGCAGACGATTGCCGAGTGGAC
GCGCTCGCTCGCGTTGATCGACAGCAAGATCGATTTCTACGGCGAATGGGTGGCGACCGGAACGCGCCCTGCACGCGAGT
CCAACCTGCCGCAAGGCACCGCGAAAACGGGCATTCGCCGCAAGCCAGAGCGCTAG

Upstream 100 bases:

>100_bases
CACATGCCGGAGGGCAAGATGCGCGAACTGATCGAATACTTCGACACCGATCTCGTCAACCGGGCACTCGGCGATCCGGC
GGTCGTCTGCATCGAGTCCC

Downstream 100 bases:

>100_bases
CGAAGGTGGCGACGCGGGAGGATGATCAACTCGTCGCCCGCCGATACCGCGCTGGCGTCATTCCCAGTTGTTGCTTGAAC
GCCTTGCCGAACGCCGCCTC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MAERDPARLLIGALAERTGRSIHTIRWYETQGLIPGVARDAAVRRVYTEQHVNWLELMERLRSSGMSVAQMREYTALVCE
GRSALKARHALLVAHRAQVTQTIAEWTRSLALIDSKIDFYGEWVATGTRPARESNLPQGTAKTGIRRKPER

Sequences:

>Translated_151_residues
MAERDPARLLIGALAERTGRSIHTIRWYETQGLIPGVARDAAVRRVYTEQHVNWLELMERLRSSGMSVAQMREYTALVCE
GRSALKARHALLVAHRAQVTQTIAEWTRSLALIDSKIDFYGEWVATGTRPARESNLPQGTAKTGIRRKPER
>Mature_150_residues
AERDPARLLIGALAERTGRSIHTIRWYETQGLIPGVARDAAVRRVYTEQHVNWLELMERLRSSGMSVAQMREYTALVCEG
RSALKARHALLVAHRAQVTQTIAEWTRSLALIDSKIDFYGEWVATGTRPARESNLPQGTAKTGIRRKPER

Specific function: Copper responsive transcription regulator [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 17081; Mature: 16950

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERDPARLLIGALAERTGRSIHTIRWYETQGLIPGVARDAAVRRVYTEQHVNWLELMER
CCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LRSSGMSVAQMREYTALVCEGRSALKARHALLVAHRAQVTQTIAEWTRSLALIDSKIDFY
HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEWVATGTRPARESNLPQGTAKTGIRRKPER
HHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure 
AERDPARLLIGALAERTGRSIHTIRWYETQGLIPGVARDAAVRRVYTEQHVNWLELMER
CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LRSSGMSVAQMREYTALVCEGRSALKARHALLVAHRAQVTQTIAEWTRSLALIDSKIDFY
HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GEWVATGTRPARESNLPQGTAKTGIRRKPER
HHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]