Click here to switch to the map view.

The map label for this gene is 187928811

Identifier: 187928811

GI number: 187928811

Start: 1822578

End: 1823156

Strand: Direct

Name: 187928811

Synonym: Rpic_1728

Alternate gene names: NA

Gene position: 1822578-1823156 (Clockwise)

Preceding gene: 187928808

Following gene: 187928814

Centisome position: 46.23

GC content: 66.32

Gene sequence:

>579_bases
ATGTCCAACTTCCGTCTGTTTATTGCGCTCGATCCCACGCCCGAGACGGTTGCGGTCTTGCGGCGCGCGCAGGTCTGTCT
GCGGGACGTTCACTGGAGTGGGGCGCGTTGGCTACCCCCGGAACAATGGCACGCAACGCTACGCTTCTTGGGGGCAACGC
CTGAGGATCAGGTGCAGCACTGGAAGCGCACGCTGCAGCAGTTCGACGTGCTCGCCCGGGATGCAGCGCCACTGCCGATC
GACGGCGTTGCAATCTGGCCAGCGCCAGCGCACCCCCGTGTGATCGTGGTCACCGCGAAGTGCGCCATATGGGCGCAGGA
TATGGCGACGCGCTTGGAGGCCCGCGCGCGCGCGGCCGGCTATCGCGCGGAAACTCGAGCATTTCACCCGCATGTCACGC
TCGCGAGAGTTGGCGTACATGCGGCATCTGCGCGATGCTTGGCCGCGGTGGACAATGCCGCCCGGGCGCTCGATGGCGCG
CACCTGCAGTTCGGCAGCGTCTCTCTGTTTGTCAGTCGGTCGCCGGCGGAGGGGCCAGCCTATGAGAGGCTGGCGACCAT
GGAGTTTCGCCCGAACTGA

Upstream 100 bases:

>100_bases
GTTGCCTGTCTGACCTATTCTGACAAGAGCAATCGGTTGTCAATGCGCCGTGCTTTAGCCCCAAAGCCGCCTCGTGTCAG
CACGCTTTCGCAGCTTGGCC

Downstream 100 bases:

>100_bases
TGATTCGGCCGCCTCCGGTGGTCGTCGGTGGGGTGCGGGTAGGCGGCGGTATTCTCGACCAACAATGCCAGTTCGATGTC
TGGCGAATCGGCGGACTGTT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSNFRLFIALDPTPETVAVLRRAQVCLRDVHWSGARWLPPEQWHATLRFLGATPEDQVQHWKRTLQQFDVLARDAAPLPI
DGVAIWPAPAHPRVIVVTAKCAIWAQDMATRLEARARAAGYRAETRAFHPHVTLARVGVHAASARCLAAVDNAARALDGA
HLQFGSVSLFVSRSPAEGPAYERLATMEFRPN

Sequences:

>Translated_192_residues
MSNFRLFIALDPTPETVAVLRRAQVCLRDVHWSGARWLPPEQWHATLRFLGATPEDQVQHWKRTLQQFDVLARDAAPLPI
DGVAIWPAPAHPRVIVVTAKCAIWAQDMATRLEARARAAGYRAETRAFHPHVTLARVGVHAASARCLAAVDNAARALDGA
HLQFGSVSLFVSRSPAEGPAYERLATMEFRPN
>Mature_191_residues
SNFRLFIALDPTPETVAVLRRAQVCLRDVHWSGARWLPPEQWHATLRFLGATPEDQVQHWKRTLQQFDVLARDAAPLPID
GVAIWPAPAHPRVIVVTAKCAIWAQDMATRLEARARAAGYRAETRAFHPHVTLARVGVHAASARCLAAVDNAARALDGAH
LQFGSVSLFVSRSPAEGPAYERLATMEFRPN

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21256; Mature: 21124

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFRLFIALDPTPETVAVLRRAQVCLRDVHWSGARWLPPEQWHATLRFLGATPEDQVQH
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
WKRTLQQFDVLARDAAPLPIDGVAIWPAPAHPRVIVVTAKCAIWAQDMATRLEARARAAG
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCC
YRAETRAFHPHVTLARVGVHAASARCLAAVDNAARALDGAHLQFGSVSLFVSRSPAEGPA
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCH
YERLATMEFRPN
HHHEEEEEECCC
>Mature Secondary Structure 
SNFRLFIALDPTPETVAVLRRAQVCLRDVHWSGARWLPPEQWHATLRFLGATPEDQVQH
CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
WKRTLQQFDVLARDAAPLPIDGVAIWPAPAHPRVIVVTAKCAIWAQDMATRLEARARAAG
HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCC
YRAETRAFHPHVTLARVGVHAASARCLAAVDNAARALDGAHLQFGSVSLFVSRSPAEGPA
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCH
YERLATMEFRPN
HHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA