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The map label for this gene is copD [H]

Identifier: 187928805

GI number: 187928805

Start: 1816300

End: 1817229

Strand: Direct

Name: copD [H]

Synonym: Rpic_1722

Alternate gene names: 187928805

Gene position: 1816300-1817229 (Clockwise)

Preceding gene: 187928804

Following gene: 187928806

Centisome position: 46.07

GC content: 61.18

Gene sequence:

>930_bases
ATGGCGGATGATTGGCTCAATATCGCCCTGCGCTTTGGGCTGTACCTGGACTTGACGATCCTTTTCGGGGTCTCGCTGTT
CGGGGTCCAGGCGTTGCGACCCGATCACCGGGCCACGGCGATTGCGCGCCGATACGTCCGTGCCGTCGGAGTCACTGCCG
CATTGGGCATCGTGCTGTCGCTCTGGAGCTTCGTTGTCATGGCCAAGGCGATGACGGGGGCCACCGAGTACGCTGAACTC
ACCAGCCATGTCTTCAGCATGATGCTGACCACCACCGCGGTTGGCCTGGCCTGGATGGCGCGATTGGTGGCCCTGGCCGG
ATGCTTGGTCGCCGTTGCGCGTTTGCGGAAGCACCCAGCGCCTCACTTCGGCGTGTGCGCCGGGCTGGGTGCGGTGGCTC
TGCTAACGGTCACTTGGGCCGGGCATGGGGCGATGGACGACGGTGTGAAGGGATACCTTCATCTCACATTTGATATCGCG
CACGTTTTGGCCGCGGGCGCCTGGGTTGGCGCATTGGCAGCGTTTGTGCTGCTGGCGTCGACAAGACAAGCGGCCTCATC
GGAAACGGTGGAAATCCTTAGTCACACATCCAATGGCTTCGCGCGTCTTGGGACGCTGATTGTTGCCACGCTGTTTGCGA
CAGGGACGTTCAACTATTTTTTGATCGTTGGGCCGACGATTAACGGGTTGTTCACCACGCCATACGGGCGCTTATTGTTG
ATCAAGCTGGCTTTGTTCGCGCTGATGCTCGGACTGGCCGCAGCCAATCGTTATCGGCTGAGCCCACGGCTTGCGGCGGC
GGTTAGGGCCGCAGACCACGTCCACGCGGTGATAGCACTGCGCCGCAGTCTGGTCATGGAAACCAGCCTTGCCATACTGA
TTTTGGCGTTGGTCGCTTGGCTTGGTGTGCTTTCGCCGCCTGGAACCTGA

Upstream 100 bases:

>100_bases
CAACCGCTGACGACCGGGACGTACAAGGTGGAGTGGCGCGCGGTCTCGTCGGATACCCACCCGATGACGGGGAATTTCAC
GTTCAAGGTGAAGTAAGGCC

Downstream 100 bases:

>100_bases
TACTGCTTACCTGTTTGCCGGAGGAACCATGATGATGAAATCGCCGACTGCCAAGCCCGTGTCCGCGACAAGACGGTCCC
TGATTGCAGGTCTGTTACTG

Product: copper resistance D domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFVVMAKAMTGATEYAEL
TSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIA
HVLAAGAWVGALAAFVLLASTRQAASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLL
IKLALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAWLGVLSPPGT

Sequences:

>Translated_309_residues
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFVVMAKAMTGATEYAEL
TSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIA
HVLAAGAWVGALAAFVLLASTRQAASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLL
IKLALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAWLGVLSPPGT
>Mature_308_residues
ADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFVVMAKAMTGATEYAELT
SHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIAH
VLAAGAWVGALAAFVLLASTRQAASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLLI
KLALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAWLGVLSPPGT

Specific function: Exact function not known. Involved in copper resistance. Appears to be involved in copper uptake in conjunction with CopC [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788145, Length=303, Percent_Identity=26.0726072607261, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008457 [H]

Pfam domain/function: PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 32675; Mature: 32544

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LWSFVVMAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIAHVLAAGAWVGALAAFVLLAS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQAASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLL
HHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHH
IKLALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAW
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC
>Mature Secondary Structure 
ADDWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LWSFVVMAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHFGVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIAHVLAAGAWVGALAAFVLLAS
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQAASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLL
HHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCHHHHHH
IKLALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAW
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVLSPPGT
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3372485; 8449873 [H]