Click here to switch to the map view.

The map label for this gene is spo0J [H]

Identifier: 187928679

GI number: 187928679

Start: 1687485

End: 1689149

Strand: Direct

Name: spo0J [H]

Synonym: Rpic_1596

Alternate gene names: 187928679

Gene position: 1687485-1689149 (Clockwise)

Preceding gene: 187928678

Following gene: 187928680

Centisome position: 42.8

GC content: 60.36

Gene sequence:

>1665_bases
ATGCAAGAAAACCAACAGAGCGTCACCGTCAAACTCGGCCAAATCCGGCCGGGCAAGAACCCCCGGAAGTACTTCGATCC
CGCGAAAATGGCGGAGATCACGGAGTCCATCCGTGAGGATGGCGTAATTCAACCTGTACTGGTGCGCCCTCTTGAGGACG
GCACCTACGAACTGGTCGCTGGCGAGCGCCGGTACCGTGGGGCGAAAGCTGCCTGCGGTGACGATTACGACATGCCCGTT
GTCATCCGTGAGATGACGGAAGGGGAAGCGCGCCGGCTGGCGCTCATCGAGAACGTTCAGCGCGCCGACATGGCGCCGTC
TGAAGAAGCCGTTGCGGCCGCGGACATCGTTGGGGACCTGAAAGGTGACCGCGATGAAGCTGCCCGCCAACTCGGCTGGC
CGCGATCGACCCTCGACCGCCGGCTGGCGCTAATGAACTGCAGTCCTGCGGTGCTGGACGCGCTGAACACGCGTTCCATC
CAGCTTGGGCATGCCGAGCTGCTTGCGACCCTGACGAAGGAAAAGCAGGACCTGTTCTTGCCGATCATTCTGCAAGAGAA
AAAGACGGTGGCGGACCTCAAGAAGGCCATCGAACAAGCTGCCTGCAACCTGAAGGACGCGATCTTCGACAAGAGCGAGT
GTGCGACATGCGCGCACAACTCGGAATTGCAGTCGGTGATGTTTTCCGAGGCGATTTCCTCCGGTAGCTGTACCAACCCG
ACCTGCTACAAGGGCAAGACCGAGACGCAGCTGGAAGGTATCTCGTACGGCCTGAAGGACGAATACCCGGTTATCCGTAT
CGTCCGCGCTGGCGACAACCACACGCGCGTGCAATTGCAGGTGGAGGGACCGACGGGAGTCGGTGCCGAACAGGCGAAAG
CATGTCACGGCTGCCAGAATTTCGGCGCCGCGGTGAGTGGTCTGCCGGACAGCCTGGGCAAGGTCTTCCGTGGTCAGTGT
TTTGATCCGTCCTGCAATGCCAAGAAGGTTGCAGCGAGGATCAAGGCCGAGCGCGCTGAAGCGCCGTCTACTGTTAAGGG
CCCCAAAGCCGCGCCGGCCAAGGAGGGCGCGGACAAGGGCGGAAAGGCCGAACACGCGGCCACGTCGATTGCCGAGTCGG
ACAAGGTGAAGACCTACCGACAAGGGGTGTGGCGCAAGGCGCTACGCCGGGAGGTGGCGGCCAACGAAGCAACGGCCAAC
CACTATCTCCTCGCACTTTCGCTGTCCGGTCATGCACGCACCATCACCAGCGACAAGATGGGGACGCTCTTTGAACGGAT
CGCGGACGAGACCAGCTCTCCCACCGATCTCTCGAAGAACCTTATCTCTGTGGCCGGCCTGGCTACTGACAAGCGGCTCA
ATCTGACGATCTCGCTCGCGCTTGCCGCGATCGAAGGAATCGATGTGCCTGTCTTGACGTCGCTCTGCAAGTACCACGCG
CTCGACCTGACCAAGCACTGGAACCTTCAGAAATCCAAGGATTTTCTGGAACTCCTGACCAAATCGGAGTTGAAGGCTCT
CGCCGACGAGCTGGGCATGCGCAACGCGCTCGGCGATCGCTTTTCCAAGCTGTTCAACCAATCGAAGCTCGAAGTCATTG
AGGCCCTCCTCAAGGTAGACGGGTTTGACTACACGGGCAAGGTGCCCAAGGTCTTGAAGTTCTGA

Upstream 100 bases:

>100_bases
CCAGCGGTTCGGTGGCCCTCGCTTTCATTTTCCATCCCATCGGGAACCTGTTCCCGGTGCGGCAACGGGTTCCCCTTTTC
CATCCCTGGAGAACCCACAA

Downstream 100 bases:

>100_bases
CCACGCCTCGCTTCCCCATCCCATTCATTTTCAAGGAAATCCCTATGTTTCAAGAACTGGTGCCGCTCGTGAAGGCGAGC
GACAAGGTTGTTATCACCCT

Product: parB-like partition protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MQENQQSVTVKLGQIRPGKNPRKYFDPAKMAEITESIREDGVIQPVLVRPLEDGTYELVAGERRYRGAKAACGDDYDMPV
VIREMTEGEARRLALIENVQRADMAPSEEAVAAADIVGDLKGDRDEAARQLGWPRSTLDRRLALMNCSPAVLDALNTRSI
QLGHAELLATLTKEKQDLFLPIILQEKKTVADLKKAIEQAACNLKDAIFDKSECATCAHNSELQSVMFSEAISSGSCTNP
TCYKGKTETQLEGISYGLKDEYPVIRIVRAGDNHTRVQLQVEGPTGVGAEQAKACHGCQNFGAAVSGLPDSLGKVFRGQC
FDPSCNAKKVAARIKAERAEAPSTVKGPKAAPAKEGADKGGKAEHAATSIAESDKVKTYRQGVWRKALRREVAANEATAN
HYLLALSLSGHARTITSDKMGTLFERIADETSSPTDLSKNLISVAGLATDKRLNLTISLALAAIEGIDVPVLTSLCKYHA
LDLTKHWNLQKSKDFLELLTKSELKALADELGMRNALGDRFSKLFNQSKLEVIEALLKVDGFDYTGKVPKVLKF

Sequences:

>Translated_554_residues
MQENQQSVTVKLGQIRPGKNPRKYFDPAKMAEITESIREDGVIQPVLVRPLEDGTYELVAGERRYRGAKAACGDDYDMPV
VIREMTEGEARRLALIENVQRADMAPSEEAVAAADIVGDLKGDRDEAARQLGWPRSTLDRRLALMNCSPAVLDALNTRSI
QLGHAELLATLTKEKQDLFLPIILQEKKTVADLKKAIEQAACNLKDAIFDKSECATCAHNSELQSVMFSEAISSGSCTNP
TCYKGKTETQLEGISYGLKDEYPVIRIVRAGDNHTRVQLQVEGPTGVGAEQAKACHGCQNFGAAVSGLPDSLGKVFRGQC
FDPSCNAKKVAARIKAERAEAPSTVKGPKAAPAKEGADKGGKAEHAATSIAESDKVKTYRQGVWRKALRREVAANEATAN
HYLLALSLSGHARTITSDKMGTLFERIADETSSPTDLSKNLISVAGLATDKRLNLTISLALAAIEGIDVPVLTSLCKYHA
LDLTKHWNLQKSKDFLELLTKSELKALADELGMRNALGDRFSKLFNQSKLEVIEALLKVDGFDYTGKVPKVLKF
>Mature_554_residues
MQENQQSVTVKLGQIRPGKNPRKYFDPAKMAEITESIREDGVIQPVLVRPLEDGTYELVAGERRYRGAKAACGDDYDMPV
VIREMTEGEARRLALIENVQRADMAPSEEAVAAADIVGDLKGDRDEAARQLGWPRSTLDRRLALMNCSPAVLDALNTRSI
QLGHAELLATLTKEKQDLFLPIILQEKKTVADLKKAIEQAACNLKDAIFDKSECATCAHNSELQSVMFSEAISSGSCTNP
TCYKGKTETQLEGISYGLKDEYPVIRIVRAGDNHTRVQLQVEGPTGVGAEQAKACHGCQNFGAAVSGLPDSLGKVFRGQC
FDPSCNAKKVAARIKAERAEAPSTVKGPKAAPAKEGADKGGKAEHAATSIAESDKVKTYRQGVWRKALRREVAANEATAN
HYLLALSLSGHARTITSDKMGTLFERIADETSSPTDLSKNLISVAGLATDKRLNLTISLALAAIEGIDVPVLTSLCKYHA
LDLTKHWNLQKSKDFLELLTKSELKALADELGMRNALGDRFSKLFNQSKLEVIEALLKVDGFDYTGKVPKVLKF

Specific function: Required for the initiation of sporulation and for normal chromosome segregation. Antagonizes sporulation inhibition of soj. It probably interacts with a specific DNA site and other proteins involved in partitioning and cell division, and antagonizes soj

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR013741 [H]

Pfam domain/function: PF08535 KorB; PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 60296; Mature: 60296

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQENQQSVTVKLGQIRPGKNPRKYFDPAKMAEITESIREDGVIQPVLVRPLEDGTYELVA
CCCCCCEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHEEECCCCCCEEEEE
GERRYRGAKAACGDDYDMPVVIREMTEGEARRLALIENVQRADMAPSEEAVAAADIVGDL
CHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
KGDRDEAARQLGWPRSTLDRRLALMNCSPAVLDALNTRSIQLGHAELLATLTKEKQDLFL
CCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEECCHHHHHHHHHHCCCCEEE
PIILQEKKTVADLKKAIEQAACNLKDAIFDKSECATCAHNSELQSVMFSEAISSGSCTNP
EEEECCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
TCYKGKTETQLEGISYGLKDEYPVIRIVRAGDNHTRVQLQVEGPTGVGAEQAKACHGCQN
CCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
FGAAVSGLPDSLGKVFRGQCFDPSCNAKKVAARIKAERAEAPSTVKGPKAAPAKEGADKG
HCHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GKAEHAATSIAESDKVKTYRQGVWRKALRREVAANEATANHYLLALSLSGHARTITSDKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCHHH
GTLFERIADETSSPTDLSKNLISVAGLATDKRLNLTISLALAAIEGIDVPVLTSLCKYHA
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHHHH
LDLTKHWNLQKSKDFLELLTKSELKALADELGMRNALGDRFSKLFNQSKLEVIEALLKVD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC
GFDYTGKVPKVLKF
CCCCCCCCCHHHCC
>Mature Secondary Structure
MQENQQSVTVKLGQIRPGKNPRKYFDPAKMAEITESIREDGVIQPVLVRPLEDGTYELVA
CCCCCCEEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHEEECCCCCCEEEEE
GERRYRGAKAACGDDYDMPVVIREMTEGEARRLALIENVQRADMAPSEEAVAAADIVGDL
CHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
KGDRDEAARQLGWPRSTLDRRLALMNCSPAVLDALNTRSIQLGHAELLATLTKEKQDLFL
CCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEECCHHHHHHHHHHCCCCEEE
PIILQEKKTVADLKKAIEQAACNLKDAIFDKSECATCAHNSELQSVMFSEAISSGSCTNP
EEEECCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
TCYKGKTETQLEGISYGLKDEYPVIRIVRAGDNHTRVQLQVEGPTGVGAEQAKACHGCQN
CCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
FGAAVSGLPDSLGKVFRGQCFDPSCNAKKVAARIKAERAEAPSTVKGPKAAPAKEGADKG
HCHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GKAEHAATSIAESDKVKTYRQGVWRKALRREVAANEATANHYLLALSLSGHARTITSDKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCHHH
GTLFERIADETSSPTDLSKNLISVAGLATDKRLNLTISLALAAIEGIDVPVLTSLCKYHA
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHHHH
LDLTKHWNLQKSKDFLELLTKSELKALADELGMRNALGDRFSKLFNQSKLEVIEALLKVD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC
GFDYTGKVPKVLKF
CCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 1552862; 9384377; 1900505; 8071208 [H]