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The map label for this gene is ydiU [C]

Identifier: 187928542

GI number: 187928542

Start: 1548415

End: 1550004

Strand: Direct

Name: ydiU [C]

Synonym: Rpic_1456

Alternate gene names: 187928542

Gene position: 1548415-1550004 (Clockwise)

Preceding gene: 187928535

Following gene: 187928543

Centisome position: 39.27

GC content: 65.47

Gene sequence:

>1590_bases
ATGACTGCCTCCCCCGCCGCCTTGCCTGACGATTCCCTTGCGAGCCCCTTCGACTGGCCTGGCCGCCCCGCAGCAGCCCC
CGGTTTCTCGGCACTGGGCGAACGCTTTCTTACACGCCTGCCCCCGATGCCCATGCCTTCGGGAGCGATTGGCGAACCGT
ATCTGGTCGGGTTCTCGCCAGATGCCGCAGCGTCGCTCGGCATCACGCGCGCCGAACTCGACACCGCTGCGGGGCTGGCC
GTATTCACCGGTAACGCCGTCGCCACCTGGAGCGACCCGCTCGCCACTGTCTACTCAGGCCACCAGTTCGGCGTGTGGGC
AGGCCAGTTGGGCGATGGCCGTGCGCTGCTGCTGGCGGAATTCCAGACCGCCGACGGCCCCTACGAAGTCCAGCTCAAAG
GTGCCGGCCGTACGCCGTATTCGCGCATGGGCGACGGGCGCGCCGTGCTGCGATCGTCCATTCGGGAATTCCTCTGCTCG
GAAGCCATGGCAGGCCTCGGCATTCCGACCACGCGCGCCCTGTGCGTGACCGGCGCTGACGCCCCCGTGCGCCGCGAAGA
GATCGAAACCGCTGCCGTCGTTACGCGCCTCGCGCCGTCGTTCGTGCGCTTCGGTCATTTCGAACACTTTGCGGCCAGCG
AACAGCTGCCCCAGCTTCGTGCACTCGCCGATTACGTCATCGACCGCTTCCACCCCGCCAGCCGCAGCGAGCCGCAACCG
TATCTCGCGCTGCTGCGCGAACTCGCCCGCCGCACCGCTGAACTGATGGCCGACTGGCAAGCCGTTGGCTTCTGCCACGG
CGTGATGAACACAGACAACATGTCGATTCTTGGCCTCACGCTCGACTACGGCCCGTTCGGCTTCCTGGACGGCTTTGACG
CCAACCACATCTGCAACCACTCGGACACCGGCGGCCGTTACGCCTATGCGCAGCAGCCGCAGATCGGCTACTGGAACCTG
TTCTGCCTCGCGCAGGCGTTGCTGCCGTTGTTCGGCGAAGATCCCGACGTTTTCGTCAATTTGAGCGACGAAGCGCAGGC
TCAACCCGCCATCGATGCCGCGCAAAACGTATTACTGACCTACCGCGACGTCTACGGCGCGGCGTTCTACGCACGTTATC
GCGCCAAGCTCGGCCTCTCCACCGCACAGGACGCAGACGAGGCGCTCTTCGGCGATCTGTTCAAGCTCCTGCACAACCAG
CGTGCCGATTACACGTTGTTCTTCCGCCACCTCGCCGACGTACGCCGCGACGACACGCCGGCTGCGGCAGAAGCGCGCAC
CGTGCGCGATTTCTTCTTCGACCGTGCAGCCGCAGACGTATGGCTTGCCGCTTATCGGCAGCGCTTGCAGGCCGAACCGC
AATCCGACGACGAACGCGCAGCCGCCATGCAGCGCGTCAACCCGAAATACGTGCTGCGTAACCACCTGGCTGAAATCGCC
ATCCGCCGCGCCAAGGAAAAGGATTTCTCCGAAGTCGAAAACCTGCGCGCCGTGCTGGCCCGCCCGTTTGACGACCACCC
CGGCTTCGAGCACTACGCGCAGCCCGCGCCGGACTGGGCATCGTCATTGGAAGTGAGCTGCTCGTCGTGA

Upstream 100 bases:

>100_bases
CGCATTTTGCTGCGCTGCAAAGCGCACAACATTTGAGGATTCGGCACTGTTTTTGCGCCGTTTCCTGTGTTATCCGCCCC
CTGCCCGGCCGCCCCATCCC

Downstream 100 bases:

>100_bases
GCCGGCATGCCGACATGCGGGGCGCGTGATGCACCGGAACTGACGCCGTGCTCTAATCCGCGCCTGTCAGGATTGCCGCT
GCCGCACGACAAAACAACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 528

Protein sequence:

>529_residues
MTASPAALPDDSLASPFDWPGRPAAAPGFSALGERFLTRLPPMPMPSGAIGEPYLVGFSPDAAASLGITRAELDTAAGLA
VFTGNAVATWSDPLATVYSGHQFGVWAGQLGDGRALLLAEFQTADGPYEVQLKGAGRTPYSRMGDGRAVLRSSIREFLCS
EAMAGLGIPTTRALCVTGADAPVRREEIETAAVVTRLAPSFVRFGHFEHFAASEQLPQLRALADYVIDRFHPASRSEPQP
YLALLRELARRTAELMADWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIGYWNL
FCLAQALLPLFGEDPDVFVNLSDEAQAQPAIDAAQNVLLTYRDVYGAAFYARYRAKLGLSTAQDADEALFGDLFKLLHNQ
RADYTLFFRHLADVRRDDTPAAAEARTVRDFFFDRAAADVWLAAYRQRLQAEPQSDDERAAAMQRVNPKYVLRNHLAEIA
IRRAKEKDFSEVENLRAVLARPFDDHPGFEHYAQPAPDWASSLEVSCSS

Sequences:

>Translated_529_residues
MTASPAALPDDSLASPFDWPGRPAAAPGFSALGERFLTRLPPMPMPSGAIGEPYLVGFSPDAAASLGITRAELDTAAGLA
VFTGNAVATWSDPLATVYSGHQFGVWAGQLGDGRALLLAEFQTADGPYEVQLKGAGRTPYSRMGDGRAVLRSSIREFLCS
EAMAGLGIPTTRALCVTGADAPVRREEIETAAVVTRLAPSFVRFGHFEHFAASEQLPQLRALADYVIDRFHPASRSEPQP
YLALLRELARRTAELMADWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIGYWNL
FCLAQALLPLFGEDPDVFVNLSDEAQAQPAIDAAQNVLLTYRDVYGAAFYARYRAKLGLSTAQDADEALFGDLFKLLHNQ
RADYTLFFRHLADVRRDDTPAAAEARTVRDFFFDRAAADVWLAAYRQRLQAEPQSDDERAAAMQRVNPKYVLRNHLAEIA
IRRAKEKDFSEVENLRAVLARPFDDHPGFEHYAQPAPDWASSLEVSCSS
>Mature_528_residues
TASPAALPDDSLASPFDWPGRPAAAPGFSALGERFLTRLPPMPMPSGAIGEPYLVGFSPDAAASLGITRAELDTAAGLAV
FTGNAVATWSDPLATVYSGHQFGVWAGQLGDGRALLLAEFQTADGPYEVQLKGAGRTPYSRMGDGRAVLRSSIREFLCSE
AMAGLGIPTTRALCVTGADAPVRREEIETAAVVTRLAPSFVRFGHFEHFAASEQLPQLRALADYVIDRFHPASRSEPQPY
LALLRELARRTAELMADWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNHSDTGGRYAYAQQPQIGYWNLF
CLAQALLPLFGEDPDVFVNLSDEAQAQPAIDAAQNVLLTYRDVYGAAFYARYRAKLGLSTAQDADEALFGDLFKLLHNQR
ADYTLFFRHLADVRRDDTPAAAEARTVRDFFFDRAAADVWLAAYRQRLQAEPQSDDERAAAMQRVNPKYVLRNHLAEIAI
RRAKEKDFSEVENLRAVLARPFDDHPGFEHYAQPAPDWASSLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=493, Percent_Identity=40.3651115618661, Blast_Score=284, Evalue=1e-76,
Organism=Escherichia coli, GI1787999, Length=493, Percent_Identity=48.2758620689655, Blast_Score=413, Evalue=1e-116,
Organism=Saccharomyces cerevisiae, GI6325034, Length=401, Percent_Identity=35.1620947630923, Blast_Score=213, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 57936; Mature: 57805

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASPAALPDDSLASPFDWPGRPAAAPGFSALGERFLTRLPPMPMPSGAIGEPYLVGFSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
DAAASLGITRAELDTAAGLAVFTGNAVATWSDPLATVYSGHQFGVWAGQLGDGRALLLAE
CCHHHCCCHHHHHHHHCCEEEEECCEEEECCCCHHHHHCCCEECEEECCCCCCCEEEEEE
FQTADGPYEVQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMAGLGIPTTRALCVTGAD
EECCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
APVRREEIETAAVVTRLAPSFVRFGHFEHFAASEQLPQLRALADYVIDRFHPASRSEPQP
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
YLALLRELARRTAELMADWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
SDTGGRYAYAQQPQIGYWNLFCLAQALLPLFGEDPDVFVNLSDEAQAQPAIDAAQNVLLT
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
YRDVYGAAFYARYRAKLGLSTAQDADEALFGDLFKLLHNQRADYTLFFRHLADVRRDDTP
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
AAAEARTVRDFFFDRAAADVWLAAYRQRLQAEPQSDDERAAAMQRVNPKYVLRNHLAEIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
IRRAKEKDFSEVENLRAVLARPFDDHPGFEHYAQPAPDWASSLEVSCSS
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCCCCCCC
>Mature Secondary Structure 
TASPAALPDDSLASPFDWPGRPAAAPGFSALGERFLTRLPPMPMPSGAIGEPYLVGFSP
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC
DAAASLGITRAELDTAAGLAVFTGNAVATWSDPLATVYSGHQFGVWAGQLGDGRALLLAE
CCHHHCCCHHHHHHHHCCEEEEECCEEEECCCCHHHHHCCCEECEEECCCCCCCEEEEEE
FQTADGPYEVQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMAGLGIPTTRALCVTGAD
EECCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
APVRREEIETAAVVTRLAPSFVRFGHFEHFAASEQLPQLRALADYVIDRFHPASRSEPQP
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
YLALLRELARRTAELMADWQAVGFCHGVMNTDNMSILGLTLDYGPFGFLDGFDANHICNH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
SDTGGRYAYAQQPQIGYWNLFCLAQALLPLFGEDPDVFVNLSDEAQAQPAIDAAQNVLLT
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
YRDVYGAAFYARYRAKLGLSTAQDADEALFGDLFKLLHNQRADYTLFFRHLADVRRDDTP
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
AAAEARTVRDFFFDRAAADVWLAAYRQRLQAEPQSDDERAAAMQRVNPKYVLRNHLAEIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
IRRAKEKDFSEVENLRAVLARPFDDHPGFEHYAQPAPDWASSLEVSCSS
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]