Click here to switch to the map view.

The map label for this gene is nylB' [H]

Identifier: 187928527

GI number: 187928527

Start: 1528523

End: 1529926

Strand: Reverse

Name: nylB' [H]

Synonym: Rpic_1441

Alternate gene names: 187928527

Gene position: 1529926-1528523 (Counterclockwise)

Preceding gene: 187928528

Following gene: 187928526

Centisome position: 38.81

GC content: 64.53

Gene sequence:

>1404_bases
ATGCAACAACCCGCGCGGCGGACGGCGTCTGCCCTTGCCATCACTCTGCTTTGCTGCACCGGACTGACCATGACCTTGGA
AGGATGCGCCTCCAGTTCCGCACCGGCTGCCGCACCGGCCGGCGACACGCAAACCACCGTGCAGGCGCCGCCCGCACCGA
CGCCGCCGATGCAGAAACCGCTCACGGCCGACGAGTCCGATCCGAGCAGGATGGGCTGGATGCAGGGCTTTCCGCCGCCG
CCCGATCGCATCATCCGCTTTGACTTGGCGGGCAACATGTTCCCGCGCACGCGCTACGGCTATAGCCACATGCGCGAGTT
TGTGCCGACGCGTGTGGTGTGGCGCGGCGACGGTCCGGTCAGCAAGCTGCCGCGCGCCGAGCGCGATATCAGCGGCGTGT
TGTTTACCGATCCGAACGGCACTCGCCGCACGTTTGCCGAGGCGCTCAAGCTGACCTACACCGACGGCATCCTCGTCATG
CACAAGGGAAAGGTTGTCTACGAGCGTTACTTCGGCGCGCTCGATGCGCATACGCAGCACATCGCCATGTCGGTCACGAA
ATCGTTTGTCGGCACGCTAGCCGCCATGCTGGTGGCCGACGGCAAGCTCGATCCGGCCGCGCCGGTGACGCAGTACGTGC
CGGAGCTGAAGGACACGGCCTATGGCGACGCCACTGTGCGCCAGGTCATGGACATGACGGTGGGCGTGCGTTATTCCGAA
AACTACGCCGACCCGAACGCCGATGTCTGGGCCTACGCCCGCGCCGGCGGCATGCTGCCGCGGCCGGCGGGCTACAAGGG
CCCTGACAATTTCTACGATTACCTGACGACGCTGCGCAAGGAAGGCGAGCACGACGCGGAGTTCGCGTACAAGACCGTCA
ACGCCGAAACGCTGGCGTGGATCGTGCGCCGTGCGTCGAACAAATCGCTGGCGGCGCTGCTGTCCGAGCGCATCTGGCAA
CCGATGGGGGCACAGGATGACGCGTACTTCTCGATCGACAGCATCGGTACCGAATCGGGCGGAGGTGGCCTGAACACCAC
GCTGCGCGATCTGGCGCGCTTTGGCGAGATGATCCGCGACGACGGCCGCTTCAACGGCAAGCAGATCCTGCCCAAAAGTG
TGATCGACGATATTCGCCGGGGCGGCGACCCGGCCAAGTTTGCCAAGGCAGGCTACACGACGCTGCCCGGCTATTCGTAT
CGCAACATGTGGTGGGTTTCGAGCAACGAGCACCACACGTTCGAAGCGCGCGGCATCCATGGCCAGCGCATCTATATTGA
TCCGGTGGCCCAGATGACGATCGTGCGCTACGCCTCGCACCCGATCGCTGCCAATGCTGCCAATGATCCGGTCACGCACC
GCGCCTATGCGGCGCTGGCCGAGTACTTCATGCAACACAAGTAA

Upstream 100 bases:

>100_bases
ACCCGGTGCGGACGGCTGATCAGACAACACCGCAGTTGGAGTACCCAGTTGCACACCGGATAGCGTCCGACACACAAGAA
GAGCAACCACGGAGACACCC

Downstream 100 bases:

>100_bases
CAACCCGAACCAACACCGATATCCGATATTCAGGAGCGTTTTTCATGTCGAAGACCTATCAGCGCATCGTTCTGGCTTCG
CGCCCGCAAGGGGCCGTGAC

Product: 6-aminohexanoate-dimer hydrolase

Products: NA

Alternate protein names: Nylon oligomers-degrading enzyme EII' [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MQQPARRTASALAITLLCCTGLTMTLEGCASSSAPAAAPAGDTQTTVQAPPAPTPPMQKPLTADESDPSRMGWMQGFPPP
PDRIIRFDLAGNMFPRTRYGYSHMREFVPTRVVWRGDGPVSKLPRAERDISGVLFTDPNGTRRTFAEALKLTYTDGILVM
HKGKVVYERYFGALDAHTQHIAMSVTKSFVGTLAAMLVADGKLDPAAPVTQYVPELKDTAYGDATVRQVMDMTVGVRYSE
NYADPNADVWAYARAGGMLPRPAGYKGPDNFYDYLTTLRKEGEHDAEFAYKTVNAETLAWIVRRASNKSLAALLSERIWQ
PMGAQDDAYFSIDSIGTESGGGGLNTTLRDLARFGEMIRDDGRFNGKQILPKSVIDDIRRGGDPAKFAKAGYTTLPGYSY
RNMWWVSSNEHHTFEARGIHGQRIYIDPVAQMTIVRYASHPIAANAANDPVTHRAYAALAEYFMQHK

Sequences:

>Translated_467_residues
MQQPARRTASALAITLLCCTGLTMTLEGCASSSAPAAAPAGDTQTTVQAPPAPTPPMQKPLTADESDPSRMGWMQGFPPP
PDRIIRFDLAGNMFPRTRYGYSHMREFVPTRVVWRGDGPVSKLPRAERDISGVLFTDPNGTRRTFAEALKLTYTDGILVM
HKGKVVYERYFGALDAHTQHIAMSVTKSFVGTLAAMLVADGKLDPAAPVTQYVPELKDTAYGDATVRQVMDMTVGVRYSE
NYADPNADVWAYARAGGMLPRPAGYKGPDNFYDYLTTLRKEGEHDAEFAYKTVNAETLAWIVRRASNKSLAALLSERIWQ
PMGAQDDAYFSIDSIGTESGGGGLNTTLRDLARFGEMIRDDGRFNGKQILPKSVIDDIRRGGDPAKFAKAGYTTLPGYSY
RNMWWVSSNEHHTFEARGIHGQRIYIDPVAQMTIVRYASHPIAANAANDPVTHRAYAALAEYFMQHK
>Mature_467_residues
MQQPARRTASALAITLLCCTGLTMTLEGCASSSAPAAAPAGDTQTTVQAPPAPTPPMQKPLTADESDPSRMGWMQGFPPP
PDRIIRFDLAGNMFPRTRYGYSHMREFVPTRVVWRGDGPVSKLPRAERDISGVLFTDPNGTRRTFAEALKLTYTDGILVM
HKGKVVYERYFGALDAHTQHIAMSVTKSFVGTLAAMLVADGKLDPAAPVTQYVPELKDTAYGDATVRQVMDMTVGVRYSE
NYADPNADVWAYARAGGMLPRPAGYKGPDNFYDYLTTLRKEGEHDAEFAYKTVNAETLAWIVRRASNKSLAALLSERIWQ
PMGAQDDAYFSIDSIGTESGGGGLNTTLRDLARFGEMIRDDGRFNGKQILPKSVIDDIRRGGDPAKFAKAGYTTLPGYSY
RNMWWVSSNEHHTFEARGIHGQRIYIDPVAQMTIVRYASHPIAANAANDPVTHRAYAALAEYFMQHK

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: =3.5.1.46 [H]

Molecular weight: Translated: 51422; Mature: 51422

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPARRTASALAITLLCCTGLTMTLEGCASSSAPAAAPAGDTQTTVQAPPAPTPPMQKP
CCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
LTADESDPSRMGWMQGFPPPPDRIIRFDLAGNMFPRTRYGYSHMREFVPTRVVWRGDGPV
CCCCCCCHHHHCCCCCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCCH
SKLPRAERDISGVLFTDPNGTRRTFAEALKLTYTDGILVMHKGKVVYERYFGALDAHTQH
HHCCCCHHCCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHH
IAMSVTKSFVGTLAAMLVADGKLDPAAPVTQYVPELKDTAYGDATVRQVMDMTVGVRYSE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEECC
NYADPNADVWAYARAGGMLPRPAGYKGPDNFYDYLTTLRKEGEHDAEFAYKTVNAETLAW
CCCCCCCCEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHH
IVRRASNKSLAALLSERIWQPMGAQDDAYFSIDSIGTESGGGGLNTTLRDLARFGEMIRD
HHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
DGRFNGKQILPKSVIDDIRRGGDPAKFAKAGYTTLPGYSYRNMWWVSSNEHHTFEARGIH
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
GQRIYIDPVAQMTIVRYASHPIAANAANDPVTHRAYAALAEYFMQHK
CCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQPARRTASALAITLLCCTGLTMTLEGCASSSAPAAAPAGDTQTTVQAPPAPTPPMQKP
CCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
LTADESDPSRMGWMQGFPPPPDRIIRFDLAGNMFPRTRYGYSHMREFVPTRVVWRGDGPV
CCCCCCCHHHHCCCCCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCCH
SKLPRAERDISGVLFTDPNGTRRTFAEALKLTYTDGILVMHKGKVVYERYFGALDAHTQH
HHCCCCHHCCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHH
IAMSVTKSFVGTLAAMLVADGKLDPAAPVTQYVPELKDTAYGDATVRQVMDMTVGVRYSE
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEECC
NYADPNADVWAYARAGGMLPRPAGYKGPDNFYDYLTTLRKEGEHDAEFAYKTVNAETLAW
CCCCCCCCEEEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHH
IVRRASNKSLAALLSERIWQPMGAQDDAYFSIDSIGTESGGGGLNTTLRDLARFGEMIRD
HHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
DGRFNGKQILPKSVIDDIRRGGDPAKFAKAGYTTLPGYSYRNMWWVSSNEHHTFEARGIH
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
GQRIYIDPVAQMTIVRYASHPIAANAANDPVTHRAYAALAEYFMQHK
CCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6646204; 6389532; 1879421 [H]