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The map label for this gene is yfmJ [H]

Identifier: 187928526

GI number: 187928526

Start: 1527468

End: 1528478

Strand: Reverse

Name: yfmJ [H]

Synonym: Rpic_1440

Alternate gene names: 187928526

Gene position: 1528478-1527468 (Counterclockwise)

Preceding gene: 187928527

Following gene: 187928525

Centisome position: 38.77

GC content: 63.7

Gene sequence:

>1011_bases
ATGTCGAAGACCTATCAGCGCATCGTTCTGGCTTCGCGCCCGCAAGGGGCCGTGACGCCCGACAATTTCCGCCTGGAGAC
GGTGGACATCCCCGAGCTGCAGGACGGCCAGGTGCTGGTGCGCAACCATTTCCTGTCGCTCGATCCGTACATGCGCGGCC
GCATGAACGACAGCAAGTCGTATGCACAACCGCAGCCGCTGGATGAAGTGATGATCGGCGGCACGGTGGGCGTGGTGGAA
GCGTCCAAGAACCCGTCGTTTGCCGTGGGCGACAACGTCGTCGGCATGTTCGGCTGGCAGGAAATGGGCGTGTCGGACGG
CCGCGGCATCCAGAAGGTCGATACGCGCCACATTCCGCTGTCGGCGTATCTCGGCTCGGTGGGCATGCCGGGCGTGACGG
CGTGGTATGGCCTGAACAAGATCATGCTGCCGAAGCCCGGCCAGACCGTGGCCGTGAGCGCCGCTTCGGGCGCGGTGGGG
AGCGTGGTCGGCCAGCTTGCCAAGCTCAAGGGCTGCCGCGTGGTGGGCTTTGCCGGTGGCAAGGACAAGTGCGATTACGT
GGTCAACGAACTGGGCTTTGACGCCTGCATCGACTACAAGGCCGCCAGTGACGCGAAAGAGCTGTACAAGATGCTCAAGG
AAGCGACGCCCGACGGTATCGATTCGTACTTTGAGAACGTCGGTGGCGCGATCCTGGATGCGGTGCTCTCCCGCATGAAC
GCGTTCGGCCGCATCGCCATGTGCGGCATGATCGCCGGCTACGACGGTCAGCCGCTGCCGCTGCAGAACCCGCAGTTGAT
CCTGGTGTCGCGCCTGACCATCGAGGGCTTCATCGTCTCCGAACACATGGACGTGTGGCCGGAAGCACTGCGCGAGCTGG
GCGGCTTCGTGGCGCAGGGCAAGCTGAAATTCCGCGAGAGCGTGGCACAGGGCTTGGCGAGCGCACCGGAAGCATTCATG
GGCCTGCTCAAGGGCAAGAACTTCGGCAAGCAACTCGTCAAGCTGGTTTGA

Upstream 100 bases:

>100_bases
CGGTCACGCACCGCGCCTATGCGGCGCTGGCCGAGTACTTCATGCAACACAAGTAACAACCCGAACCAACACCGATATCC
GATATTCAGGAGCGTTTTTC

Downstream 100 bases:

>100_bases
GCTGCGCCGCACGCGGACTGTCAATCGCTTGACAGTCCGCTGGGCGAGGGCCGCCACAGAATGGCCCCACCCACAACGAA
CGCGTGAAGGAGACACCATG

Product: alcohol dehydrogenase zinc-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSKTYQRIVLASRPQGAVTPDNFRLETVDIPELQDGQVLVRNHFLSLDPYMRGRMNDSKSYAQPQPLDEVMIGGTVGVVE
ASKNPSFAVGDNVVGMFGWQEMGVSDGRGIQKVDTRHIPLSAYLGSVGMPGVTAWYGLNKIMLPKPGQTVAVSAASGAVG
SVVGQLAKLKGCRVVGFAGGKDKCDYVVNELGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGAILDAVLSRMN
AFGRIAMCGMIAGYDGQPLPLQNPQLILVSRLTIEGFIVSEHMDVWPEALRELGGFVAQGKLKFRESVAQGLASAPEAFM
GLLKGKNFGKQLVKLV

Sequences:

>Translated_336_residues
MSKTYQRIVLASRPQGAVTPDNFRLETVDIPELQDGQVLVRNHFLSLDPYMRGRMNDSKSYAQPQPLDEVMIGGTVGVVE
ASKNPSFAVGDNVVGMFGWQEMGVSDGRGIQKVDTRHIPLSAYLGSVGMPGVTAWYGLNKIMLPKPGQTVAVSAASGAVG
SVVGQLAKLKGCRVVGFAGGKDKCDYVVNELGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGAILDAVLSRMN
AFGRIAMCGMIAGYDGQPLPLQNPQLILVSRLTIEGFIVSEHMDVWPEALRELGGFVAQGKLKFRESVAQGLASAPEAFM
GLLKGKNFGKQLVKLV
>Mature_335_residues
SKTYQRIVLASRPQGAVTPDNFRLETVDIPELQDGQVLVRNHFLSLDPYMRGRMNDSKSYAQPQPLDEVMIGGTVGVVEA
SKNPSFAVGDNVVGMFGWQEMGVSDGRGIQKVDTRHIPLSAYLGSVGMPGVTAWYGLNKIMLPKPGQTVAVSAASGAVGS
VVGQLAKLKGCRVVGFAGGKDKCDYVVNELGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGAILDAVLSRMNA
FGRIAMCGMIAGYDGQPLPLQNPQLILVSRLTIEGFIVSEHMDVWPEALRELGGFVAQGKLKFRESVAQGLASAPEAFMG
LLKGKNFGKQLVKLV

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=325, Percent_Identity=42.4615384615385, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI226059133, Length=325, Percent_Identity=42.4615384615385, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI226246682, Length=345, Percent_Identity=39.7101449275362, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI226246680, Length=345, Percent_Identity=39.7101449275362, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI22748929, Length=345, Percent_Identity=39.7101449275362, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI226056130, Length=297, Percent_Identity=41.4141414141414, Blast_Score=197, Evalue=8e-51,
Organism=Homo sapiens, GI28557745, Length=330, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI226510941, Length=337, Percent_Identity=46.2908011869436, Blast_Score=295, Evalue=3e-81,
Organism=Caenorhabditis elegans, GI133901710, Length=351, Percent_Identity=35.6125356125356, Blast_Score=189, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI133901712, Length=351, Percent_Identity=35.6125356125356, Blast_Score=189, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6323504, Length=323, Percent_Identity=28.1733746130031, Blast_Score=115, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36070; Mature: 35939

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTYQRIVLASRPQGAVTPDNFRLETVDIPELQDGQVLVRNHFLSLDPYMRGRMNDSKS
CCCCHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEHHCCCCCHHHHCCCCCCCC
YAQPQPLDEVMIGGTVGVVEASKNPSFAVGDNVVGMFGWQEMGVSDGRGIQKVDTRHIPL
CCCCCCHHHHHCCCEEEEEECCCCCCEEECCCEEEECCHHHCCCCCCCCCCHHCCCCCCH
SAYLGSVGMPGVTAWYGLNKIMLPKPGQTVAVSAASGAVGSVVGQLAKLKGCRVVGFAGG
HHHHCCCCCCCHHHHHCCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
KDKCDYVVNELGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGAILDAVLSRMN
CCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHH
AFGRIAMCGMIAGYDGQPLPLQNPQLILVSRLTIEGFIVSEHMDVWPEALRELGGFVAQG
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHCCHHHCC
KLKFRESVAQGLASAPEAFMGLLKGKNFGKQLVKLV
HHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHC
>Mature Secondary Structure 
SKTYQRIVLASRPQGAVTPDNFRLETVDIPELQDGQVLVRNHFLSLDPYMRGRMNDSKS
CCCHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEHHCCCCCHHHHCCCCCCCC
YAQPQPLDEVMIGGTVGVVEASKNPSFAVGDNVVGMFGWQEMGVSDGRGIQKVDTRHIPL
CCCCCCHHHHHCCCEEEEEECCCCCCEEECCCEEEECCHHHCCCCCCCCCCHHCCCCCCH
SAYLGSVGMPGVTAWYGLNKIMLPKPGQTVAVSAASGAVGSVVGQLAKLKGCRVVGFAGG
HHHHCCCCCCCHHHHHCCCEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCC
KDKCDYVVNELGFDACIDYKAASDAKELYKMLKEATPDGIDSYFENVGGAILDAVLSRMN
CCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHH
AFGRIAMCGMIAGYDGQPLPLQNPQLILVSRLTIEGFIVSEHMDVWPEALRELGGFVAQG
HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHCCHHHCC
KLKFRESVAQGLASAPEAFMGLLKGKNFGKQLVKLV
HHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]