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The map label for this gene is ykgD [C]

Identifier: 187928493

GI number: 187928493

Start: 1496865

End: 1497827

Strand: Direct

Name: ykgD [C]

Synonym: Rpic_1407

Alternate gene names: 187928493

Gene position: 1496865-1497827 (Clockwise)

Preceding gene: 187928481

Following gene: 187928495

Centisome position: 37.97

GC content: 70.51

Gene sequence:

>963_bases
ATGCTGACTCCCCTGCCCGACGTGCACGACCTTGTTAGCGAGCTGCTGCTCGGCATGCGGCTGAGCGGCGTCCAGTACCG
CCGTATCCACGTGGCGCGGCCCTTCGGGCTGAGCTTTGGCAAGGCGCCGGGGCGTGCGCAGTTTCACTTCGTGGGGCGCG
GGCCGGTGCTGCTGCGCGACGCGTCGGGGGCGACGATGCGGCTGGAAGCGGGCGATGCGGTGTTGCTGCCGCAGGGCACC
CCGCACGCGTTGCTGTCCGATCCGGATGCGCCGTGCCGCGAGATCGCCGGCTTTGAATCCGCGAAGATCTGCGACACGGT
GGCGTCGGTTGGCGTCGGGGCGGAAGCGGCCCCGGGCGATGCGCTCATTTTCAGCGCCTGCATGGAGCTGGATCTGGGCG
GCATGCAGCCCTTGGTGGGCACGATGCCGGAGTTCATGCACGTCGGCACCTTGCTCGCGCGCTACCCGGAAATCCGCCCG
ATGCTCGACGCGATGGAGCGCGAATCGTGCTCGGAGCGCGCAGGTTTTGCCGGTATCCTCGCGCGGCTGGCGGACGTGGT
GGCCGCCTTCATCGTGCGCGGCTGGGTGGAGTGCGGCTGCGGCGACGCCACGGGCTGGGTGCAGGCGCTGCGCGAGCCGA
AACTCGGTCCGGCGATCGTCGCCCTGCATCGTGACCCAGGGCGCAACTGGAGCGTCGCGGAGCTGGCAGCGCAAGCCGGG
GTCTCGCGCTCGGTGTTTGCCGAGCGCTTCCTTGCAGCGACCGGAATGACGCCCGTGCGCTATCTGACCGAGCTGCGGAT
GCGGCTCGCCGCGCAATGGATCACGCGTGACCGCGAGGCGATCGAAGCCGTCGCGTACCGGCTCGGCTATGGGTCGCTCG
CTGCGTTCAGCCGCGCGTTCAAGCGGGTGGTCGGACGACCGCCGGGGGCCATGCGCGCGGAGGGTGCGGAAGCCGACGCG
TGA

Upstream 100 bases:

>100_bases
ATCAGGGAAAATACCAATAAGGGCGCATGGTAGGGCCCGATAGCCGGACGGTCTATGGCATACACTCCGACCTTGTTGAT
CAATCGTCCGGATTTTCGAC

Downstream 100 bases:

>100_bases
CGGTCAGCGATGACGATAGCGCTGCGCCGCGTGCCGAATCTCCTTGCTGAATTCCGCGCAGGCATGCGTCATCAGGTCCG
CCGATCGGTAGACCATGTAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLTPLPDVHDLVSELLLGMRLSGVQYRRIHVARPFGLSFGKAPGRAQFHFVGRGPVLLRDASGATMRLEAGDAVLLPQGT
PHALLSDPDAPCREIAGFESAKICDTVASVGVGAEAAPGDALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRP
MLDAMERESCSERAGFAGILARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGPAIVALHRDPGRNWSVAELAAQAG
VSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDREAIEAVAYRLGYGSLAAFSRAFKRVVGRPPGAMRAEGAEADA

Sequences:

>Translated_320_residues
MLTPLPDVHDLVSELLLGMRLSGVQYRRIHVARPFGLSFGKAPGRAQFHFVGRGPVLLRDASGATMRLEAGDAVLLPQGT
PHALLSDPDAPCREIAGFESAKICDTVASVGVGAEAAPGDALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRP
MLDAMERESCSERAGFAGILARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGPAIVALHRDPGRNWSVAELAAQAG
VSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDREAIEAVAYRLGYGSLAAFSRAFKRVVGRPPGAMRAEGAEADA
>Mature_320_residues
MLTPLPDVHDLVSELLLGMRLSGVQYRRIHVARPFGLSFGKAPGRAQFHFVGRGPVLLRDASGATMRLEAGDAVLLPQGT
PHALLSDPDAPCREIAGFESAKICDTVASVGVGAEAAPGDALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRP
MLDAMERESCSERAGFAGILARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGPAIVALHRDPGRNWSVAELAAQAG
VSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDREAIEAVAYRLGYGSLAAFSRAFKRVVGRPPGAMRAEGAEADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=269, Percent_Identity=26.3940520446097, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082197, Length=81, Percent_Identity=41.9753086419753, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34210; Mature: 34210

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPLPDVHDLVSELLLGMRLSGVQYRRIHVARPFGLSFGKAPGRAQFHFVGRGPVLLRD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEE
ASGATMRLEAGDAVLLPQGTPHALLSDPDAPCREIAGFESAKICDTVASVGVGAEAAPGD
CCCCEEEEECCCEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCH
ALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRPMLDAMERESCSERAGFAGIL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHH
ARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGPAIVALHRDPGRNWSVAELAAQAG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHC
VSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDREAIEAVAYRLGYGSLAAFSRAF
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KRVVGRPPGAMRAEGAEADA
HHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTPLPDVHDLVSELLLGMRLSGVQYRRIHVARPFGLSFGKAPGRAQFHFVGRGPVLLRD
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEE
ASGATMRLEAGDAVLLPQGTPHALLSDPDAPCREIAGFESAKICDTVASVGVGAEAAPGD
CCCCEEEEECCCEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCH
ALIFSACMELDLGGMQPLVGTMPEFMHVGTLLARYPEIRPMLDAMERESCSERAGFAGIL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHH
ARLADVVAAFIVRGWVECGCGDATGWVQALREPKLGPAIVALHRDPGRNWSVAELAAQAG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHC
VSRSVFAERFLAATGMTPVRYLTELRMRLAAQWITRDREAIEAVAYRLGYGSLAAFSRAF
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KRVVGRPPGAMRAEGAEADA
HHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]