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The map label for this gene is 187928408

Identifier: 187928408

GI number: 187928408

Start: 1414277

End: 1414945

Strand: Direct

Name: 187928408

Synonym: Rpic_1320

Alternate gene names: NA

Gene position: 1414277-1414945 (Clockwise)

Preceding gene: 187928407

Following gene: 187928411

Centisome position: 35.87

GC content: 65.02

Gene sequence:

>669_bases
ATGCAAGCAACACGACTTTCAGCGGGACGTCATGCGGGCGTCGATAATGGGCGGATCGCCAGCCCGGCGTTTGACGACCC
TGCCGTGACCCAGCTCACTCTTCCCGGATTCGAAGCCACCCCGCAATTGCCCGCGCATCGCCTGTTTCTGGCGATCAAGC
CTGACGTGGACACCGCCGAGCGCATCGCGCGGCTGATCCAGCAATTGCGGCCCGTCGTGGGCTTCAAGGGCAAGGCGCTG
CGTACGGAGCGCCTGCATGTCACGCTGCATCATCTGGGCGATTTCGTTCATCTGCCGCCTGACGACGTCGTGGGGCGTGT
GCGTGCAGCAGCGGCCGGCCTCGCGTTGCCGGCATTCGATGCCACGTTCAACCAGGTGGTGAGCTTCCATGGCCGGCGCG
ATCATCGGCCGTTTGTGCTGCTGGGCGATGAGGGCGTGGGCGGTTTGATGGCGTTTCAGGCGGCGCTGGGCGAGGCGCTC
CAGCATGCCGCCGTGCCGGTGCCGCGTGGGCATTTCAAGCCGCACATCACGCTGTTGTATGACCGCGGTGGCTTTGCGCC
GAAAGCGGTCGAGCCCATCACGTGGACCGTGCGCGAGTTCGTTCTCATCCATAGCTGGCTAGGCAAAACGCGCTACGACG
AACTCGGCCGCTGGGCGCTCAAAGGCTGA

Upstream 100 bases:

>100_bases
CCGGATGGAGGCGCGGAGACGGTCTTCTTCGATATCTGATCGCCGCATCACATCCAAGAGACCACGCCCGGCAGGTTCAC
ACCGCCGGGCGTTGTTTTTG

Downstream 100 bases:

>100_bases
GCGCCACGTTGTTATGCGCAGCCGTCCGGCCCGCAGACAGGGCCATCGGCTTGGTTCATCGGGGCAGGCGCGCCGATGTG
CTGCGTCAGCGCCTCTGCCC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; Phosphoesterase HXTX; Ligase; Ligase Protein; 2h Phosphoesterase

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQATRLSAGRHAGVDNGRIASPAFDDPAVTQLTLPGFEATPQLPAHRLFLAIKPDVDTAERIARLIQQLRPVVGFKGKAL
RTERLHVTLHHLGDFVHLPPDDVVGRVRAAAAGLALPAFDATFNQVVSFHGRRDHRPFVLLGDEGVGGLMAFQAALGEAL
QHAAVPVPRGHFKPHITLLYDRGGFAPKAVEPITWTVREFVLIHSWLGKTRYDELGRWALKG

Sequences:

>Translated_222_residues
MQATRLSAGRHAGVDNGRIASPAFDDPAVTQLTLPGFEATPQLPAHRLFLAIKPDVDTAERIARLIQQLRPVVGFKGKAL
RTERLHVTLHHLGDFVHLPPDDVVGRVRAAAAGLALPAFDATFNQVVSFHGRRDHRPFVLLGDEGVGGLMAFQAALGEAL
QHAAVPVPRGHFKPHITLLYDRGGFAPKAVEPITWTVREFVLIHSWLGKTRYDELGRWALKG
>Mature_222_residues
MQATRLSAGRHAGVDNGRIASPAFDDPAVTQLTLPGFEATPQLPAHRLFLAIKPDVDTAERIARLIQQLRPVVGFKGKAL
RTERLHVTLHHLGDFVHLPPDDVVGRVRAAAAGLALPAFDATFNQVVSFHGRRDHRPFVLLGDEGVGGLMAFQAALGEAL
QHAAVPVPRGHFKPHITLLYDRGGFAPKAVEPITWTVREFVLIHSWLGKTRYDELGRWALKG

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24293; Mature: 24293

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQATRLSAGRHAGVDNGRIASPAFDDPAVTQLTLPGFEATPQLPAHRLFLAIKPDVDTAE
CCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
RIARLIQQLRPVVGFKGKALRTERLHVTLHHLGDFVHLPPDDVVGRVRAAAAGLALPAFD
HHHHHHHHHHHHHCCCCCEEEHHHEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCHH
ATFNQVVSFHGRRDHRPFVLLGDEGVGGLMAFQAALGEALQHAAVPVPRGHFKPHITLLY
HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DRGGFAPKAVEPITWTVREFVLIHSWLGKTRYDELGRWALKG
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MQATRLSAGRHAGVDNGRIASPAFDDPAVTQLTLPGFEATPQLPAHRLFLAIKPDVDTAE
CCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
RIARLIQQLRPVVGFKGKALRTERLHVTLHHLGDFVHLPPDDVVGRVRAAAAGLALPAFD
HHHHHHHHHHHHHCCCCCEEEHHHEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCCCHH
ATFNQVVSFHGRRDHRPFVLLGDEGVGGLMAFQAALGEALQHAAVPVPRGHFKPHITLLY
HHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DRGGFAPKAVEPITWTVREFVLIHSWLGKTRYDELGRWALKG
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA