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The map label for this gene is ltrA [H]

Identifier: 187928411

GI number: 187928411

Start: 1416669

End: 1417571

Strand: Direct

Name: ltrA [H]

Synonym: Rpic_1323

Alternate gene names: 187928411

Gene position: 1416669-1417571 (Clockwise)

Preceding gene: 187928408

Following gene: 187928416

Centisome position: 35.93

GC content: 65.45

Gene sequence:

>903_bases
ATGGATCGCATTACGTCAGCCGAGGTGTTCGTGGCGATCGTCGAGCACGGCAGCCTGAGTGCGGCCGCCGAAGGGCTCGA
CATGTCGCGCGCGATGGTCACGCGTTATCTGGCACAAATGGAGGCATGGTCCGGCGCGCGGCTGCTGCATCGGACCACGC
GCCGCATCGGCCTGACACCCGCCGGCGAGGCCACGCTTGCACGCTGCCGCCAGATGCTGGAAATCGCTTCGCAGATGGCC
GTGTCAGAAGGCCCTGAAGCCGATACGCCGCGCGGGCTACTGCGCATTGCCTGCGCGCAGTCCCTGGCGCAGCAGACGTT
GAGCGCGGCGGTGACGGCCTACCTGCGGCGCTATCCGCAAACGGCGGTCGATCTGGTAGTCGATAACCGCACTATCAACC
TCGTGGAAGAGCGCATCGACCTGGCCGTGCGCATTACCAACGATCTTGACCCGAACCTGATCGCGCGGCCGCTGGGCATG
TGCGAATCGGTCGTGGTGGCGGCGCCGTCTTACCTGGCCGCGCATGGCACGCCGCGTCGCGTACAAGACCTGGCCGTTCA
CAACTGCCTGACGTATTCGTACTTCGGCAAAAGCCTGTGGAAGTTCACCGAGGCGAAGACGGGTGCGCCGACGGACGTGC
CGGTGGGCGGCAATCTCAGCGCGAATGAATCGATGGTGTTGCTGGCAGCGGCGCGAGAGGGCGCGGGGATTGCGTTGCAG
CCGGTGTTTGCTGCCGCGCCGCTGATCGCCAGCGGGCAACTCGTGCGTTTGTTGCCTGACTACGTGCCGCAGGCGCTGGG
CATTCACGGCGTGTACAGCTCGCGCAGGCAGATGCCGTCGGCGCTGCGGGCCATGCTGGATTTTCTGGTGGACTGGTTTA
GGGTGCAGCCGAACGTTACGTGA

Upstream 100 bases:

>100_bases
CCAGGCGGATGTGATTTCTGCGAAGCCGCTACTGTAGGTTGCTTGATCCGATCAAAAAACCACCTATGATGCGCATATTT
GTTTCGCCAATCGATCAAAT

Downstream 100 bases:

>100_bases
TCCCGGAAGCCTTCCCTCGCATGGCCAACATGCCAAGCGCCAGCACGCAGAACACCACCCCCGCGTGGAACGTTGCGGCT
GCGCCGAGCTTGTCCCACAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDRITSAEVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLARCRQMLEIASQMA
VSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVDNRTINLVEERIDLAVRITNDLDPNLIARPLGM
CESVVVAAPSYLAAHGTPRRVQDLAVHNCLTYSYFGKSLWKFTEAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQ
PVFAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLVDWFRVQPNVT

Sequences:

>Translated_300_residues
MDRITSAEVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLARCRQMLEIASQMA
VSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVDNRTINLVEERIDLAVRITNDLDPNLIARPLGM
CESVVVAAPSYLAAHGTPRRVQDLAVHNCLTYSYFGKSLWKFTEAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQ
PVFAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLVDWFRVQPNVT
>Mature_300_residues
MDRITSAEVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTPAGEATLARCRQMLEIASQMA
VSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQTAVDLVVDNRTINLVEERIDLAVRITNDLDPNLIARPLGM
CESVVVAAPSYLAAHGTPRRVQDLAVHNCLTYSYFGKSLWKFTEAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQ
PVFAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLVDWFRVQPNVT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=32.0819112627986, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=32.312925170068, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=33.7748344370861, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=32.6460481099656, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=28.6206896551724, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=28.3216783216783, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=29.7202797202797, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790011, Length=306, Percent_Identity=22.8758169934641, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=25.4355400696864, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788706, Length=304, Percent_Identity=23.6842105263158, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32426; Mature: 32426

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRITSAEVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
AGEATLARCRQMLEIASQMAVSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TAVDLVVDNRTINLVEERIDLAVRITNDLDPNLIARPLGMCESVVVAAPSYLAAHGTPRR
HHHHEEECCCHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH
VQDLAVHNCLTYSYFGKSLWKFTEAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEC
PVFAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLVDWFRVQPNVT
HHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRITSAEVFVAIVEHGSLSAAAEGLDMSRAMVTRYLAQMEAWSGARLLHRTTRRIGLTP
CCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
AGEATLARCRQMLEIASQMAVSEGPEADTPRGLLRIACAQSLAQQTLSAAVTAYLRRYPQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TAVDLVVDNRTINLVEERIDLAVRITNDLDPNLIARPLGMCESVVVAAPSYLAAHGTPRR
HHHHEEECCCHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHH
VQDLAVHNCLTYSYFGKSLWKFTEAKTGAPTDVPVGGNLSANESMVLLAAAREGAGIALQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEC
PVFAAAPLIASGQLVRLLPDYVPQALGIHGVYSSRRQMPSALRAMLDFLVDWFRVQPNVT
HHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]