Click here to switch to the map view.

The map label for this gene is ydjN [H]

Identifier: 187928404

GI number: 187928404

Start: 1410279

End: 1411667

Strand: Direct

Name: ydjN [H]

Synonym: Rpic_1316

Alternate gene names: 187928404

Gene position: 1410279-1411667 (Clockwise)

Preceding gene: 187928403

Following gene: 187928406

Centisome position: 35.77

GC content: 63.35

Gene sequence:

>1389_bases
ATGAACCTTCCGCTCTTACTCAATATCGCGACGTTCGTCGTCATCCTGATCGCTCTGGGCCGTGTGAACGCGAGCTGGAG
CCTGGCCAAACGTGTGCTGCTGGGCATGATGCTGGGCATCCTGTTCGGACTGGCGCTGCATCTGATCTATGGCGAAGACA
GCGCGACGCTCAAGCTGTCGATCTCGTGGTTCGGCATCGTTGGCGGCGGCTATATCCAGTTACTGCAGATGATCGTCATG
CCGCTCGTGCTGGTGTCAGTGCTGAATTCGGTGGCCAGGCTCAACAGCACGGCGTCGCTCGGCAAGATCAGCGTGCTGAC
GATCGGCACGCTGCTGCTTACGACGCTGATCTCCGCGCTGGTCGGCGTGTTCGTCACCCACCTGTTTGGCCTGACGGCGC
AAGGGCTGGTGCAGGGCGCGAAGGAAACCGCCCGGCTCAGCGCCATCCAGGACAGCTATGTCGGCAAGGTGGCCGACCTG
TCGGTGCCGCAACTGGTGCAGTCCTTCATTCCGAAGAACCCGTTTGCCGAACTGACCGGCGCCAAGCCGACGTCCATCAT
CGGCGTGGTGATCTTTGCGGCGTTCCTCGGCGTGGCTGCCTTGAACCTGCTCAAGGATGATGCGGTGAAGGGCGAGCGCG
TGCTGACCGCCATCGACACCGCGCAGGCCTGGGTGATGAAGCTGGTGCGGCTCGTCATTCGCCTGACCCCTTACGGCGTG
CTGGCGCTGATGACGAACGTGGTGGCCGTGTCCAACGTGCAGGACATCATCAAGCTCGGCGGTTTCGTCGTGGCGTCTTA
CCTGGGTCTGGCGATCATGTTCGGCGTGCATGCCGTGCTGCTCACGCTCAACGGCATCAATCCGCTTCGCTTCTTCCGCA
AGGTCTGGCCGGCGCTGTCGTTCGCGTTCACGAGCCGGTCGAGTGCGGCCACCATTCCGCTGAGCATCGAGGCGCAGACG
CGGCGCATCGGCGTGCCGGAGTCGATTGCCAGCTTCGCCGCATCGTTTGGCACGACCATTGGCCAGAACGGCTGCGCAGG
CCTGTATCCCGCCATGCTGGCAGTGATGGTGGCGCCCACCGTGGGCATCAACCCGTTCGATCCTGTATGGATTGCAACGC
TCGTGGCGGTGGTCACGCTCAGCTCGGTCGGCGTGGCGGGTGTGGGCGGCGGCGCCACGTTTGCAGCGTTGATCGTGCTG
CCGGCGATGGGCTTGCCGGTGACGCTCGTGGCACTGCTGATCTCCATCGAACCGCTGATCGACATGGGCCGTACCGCGCT
CAACGTCAACGGCTCGATGACCGCCGGGACGATCACCAGCCAGTTGCTCGGGCAGACTGATCGCAGTGTCTTCGATGCTG
CCTATGACGTGGAGATGGCACACCGCTGA

Upstream 100 bases:

>100_bases
GTTGGCGCCGCCGACGACCTGGCCGGTAGCCGACACGGGGTCGTAGCCGGGTGTGTCCATGAAGACGATTTTCGATCGCT
GCGTGCGACACCAAAGCAAC

Downstream 100 bases:

>100_bases
TCTGCGCATCGAAATAAGAAATGCCGGCCATGGAGTCGGCATTTTTTTTTTGAGCGCAGGGCGGCTCAGTCGGGCGTCTG
CGCCAGCTCCGTCAGCAGTT

Product: sodium:dicarboxylate symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MNLPLLLNIATFVVILIALGRVNASWSLAKRVLLGMMLGILFGLALHLIYGEDSATLKLSISWFGIVGGGYIQLLQMIVM
PLVLVSVLNSVARLNSTASLGKISVLTIGTLLLTTLISALVGVFVTHLFGLTAQGLVQGAKETARLSAIQDSYVGKVADL
SVPQLVQSFIPKNPFAELTGAKPTSIIGVVIFAAFLGVAALNLLKDDAVKGERVLTAIDTAQAWVMKLVRLVIRLTPYGV
LALMTNVVAVSNVQDIIKLGGFVVASYLGLAIMFGVHAVLLTLNGINPLRFFRKVWPALSFAFTSRSSAATIPLSIEAQT
RRIGVPESIASFAASFGTTIGQNGCAGLYPAMLAVMVAPTVGINPFDPVWIATLVAVVTLSSVGVAGVGGGATFAALIVL
PAMGLPVTLVALLISIEPLIDMGRTALNVNGSMTAGTITSQLLGQTDRSVFDAAYDVEMAHR

Sequences:

>Translated_462_residues
MNLPLLLNIATFVVILIALGRVNASWSLAKRVLLGMMLGILFGLALHLIYGEDSATLKLSISWFGIVGGGYIQLLQMIVM
PLVLVSVLNSVARLNSTASLGKISVLTIGTLLLTTLISALVGVFVTHLFGLTAQGLVQGAKETARLSAIQDSYVGKVADL
SVPQLVQSFIPKNPFAELTGAKPTSIIGVVIFAAFLGVAALNLLKDDAVKGERVLTAIDTAQAWVMKLVRLVIRLTPYGV
LALMTNVVAVSNVQDIIKLGGFVVASYLGLAIMFGVHAVLLTLNGINPLRFFRKVWPALSFAFTSRSSAATIPLSIEAQT
RRIGVPESIASFAASFGTTIGQNGCAGLYPAMLAVMVAPTVGINPFDPVWIATLVAVVTLSSVGVAGVGGGATFAALIVL
PAMGLPVTLVALLISIEPLIDMGRTALNVNGSMTAGTITSQLLGQTDRSVFDAAYDVEMAHR
>Mature_462_residues
MNLPLLLNIATFVVILIALGRVNASWSLAKRVLLGMMLGILFGLALHLIYGEDSATLKLSISWFGIVGGGYIQLLQMIVM
PLVLVSVLNSVARLNSTASLGKISVLTIGTLLLTTLISALVGVFVTHLFGLTAQGLVQGAKETARLSAIQDSYVGKVADL
SVPQLVQSFIPKNPFAELTGAKPTSIIGVVIFAAFLGVAALNLLKDDAVKGERVLTAIDTAQAWVMKLVRLVIRLTPYGV
LALMTNVVAVSNVQDIIKLGGFVVASYLGLAIMFGVHAVLLTLNGINPLRFFRKVWPALSFAFTSRSSAATIPLSIEAQT
RRIGVPESIASFAASFGTTIGQNGCAGLYPAMLAVMVAPTVGINPFDPVWIATLVAVVTLSSVGVAGVGGGATFAALIVL
PAMGLPVTLVALLISIEPLIDMGRTALNVNGSMTAGTITSQLLGQTDRSVFDAAYDVEMAHR

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI194239697, Length=471, Percent_Identity=23.5668789808917, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI223468564, Length=267, Percent_Identity=28.8389513108614, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI223468566, Length=267, Percent_Identity=28.8389513108614, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI21314632, Length=423, Percent_Identity=26.0047281323877, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI5032093, Length=271, Percent_Identity=29.1512915129151, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI40254478, Length=441, Percent_Identity=24.0362811791383, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI169790839, Length=453, Percent_Identity=24.2825607064018, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI66773030, Length=481, Percent_Identity=24.948024948025, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI4827012, Length=447, Percent_Identity=22.8187919463087, Blast_Score=79, Evalue=7e-15,
Organism=Escherichia coli, GI1788024, Length=463, Percent_Identity=76.889848812095, Blast_Score=678, Evalue=0.0,
Organism=Escherichia coli, GI1790514, Length=448, Percent_Identity=27.0089285714286, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1789947, Length=430, Percent_Identity=23.7209302325581, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71996953, Length=461, Percent_Identity=25.5965292841649, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71983106, Length=417, Percent_Identity=25.4196642685851, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71983099, Length=417, Percent_Identity=25.4196642685851, Blast_Score=104, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI193206505, Length=461, Percent_Identity=25.5965292841649, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17541374, Length=444, Percent_Identity=24.0990990990991, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI193206654, Length=419, Percent_Identity=22.9116945107399, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17537407, Length=440, Percent_Identity=23.4090909090909, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24583025, Length=449, Percent_Identity=25.1670378619154, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI17137668, Length=449, Percent_Identity=25.1670378619154, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24583023, Length=449, Percent_Identity=25.1670378619154, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 48322; Mature: 48322

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPLLLNIATFVVILIALGRVNASWSLAKRVLLGMMLGILFGLALHLIYGEDSATLKLS
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
ISWFGIVGGGYIQLLQMIVMPLVLVSVLNSVARLNSTASLGKISVLTIGTLLLTTLISAL
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
VGVFVTHLFGLTAQGLVQGAKETARLSAIQDSYVGKVADLSVPQLVQSFIPKNPFAELTG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCCHHCCC
AKPTSIIGVVIFAAFLGVAALNLLKDDAVKGERVLTAIDTAQAWVMKLVRLVIRLTPYGV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LALMTNVVAVSNVQDIIKLGGFVVASYLGLAIMFGVHAVLLTLNGINPLRFFRKVWPALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FAFTSRSSAATIPLSIEAQTRRIGVPESIASFAASFGTTIGQNGCAGLYPAMLAVMVAPT
HHHCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
VGINPFDPVWIATLVAVVTLSSVGVAGVGGGATFAALIVLPAMGLPVTLVALLISIEPLI
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DMGRTALNVNGSMTAGTITSQLLGQTDRSVFDAAYDVEMAHR
HCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLPLLLNIATFVVILIALGRVNASWSLAKRVLLGMMLGILFGLALHLIYGEDSATLKLS
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
ISWFGIVGGGYIQLLQMIVMPLVLVSVLNSVARLNSTASLGKISVLTIGTLLLTTLISAL
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
VGVFVTHLFGLTAQGLVQGAKETARLSAIQDSYVGKVADLSVPQLVQSFIPKNPFAELTG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCCCCHHCCC
AKPTSIIGVVIFAAFLGVAALNLLKDDAVKGERVLTAIDTAQAWVMKLVRLVIRLTPYGV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LALMTNVVAVSNVQDIIKLGGFVVASYLGLAIMFGVHAVLLTLNGINPLRFFRKVWPALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FAFTSRSSAATIPLSIEAQTRRIGVPESIASFAASFGTTIGQNGCAGLYPAMLAVMVAPT
HHHCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
VGINPFDPVWIATLVAVVTLSSVGVAGVGGGATFAALIVLPAMGLPVTLVALLISIEPLI
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DMGRTALNVNGSMTAGTITSQLLGQTDRSVFDAAYDVEMAHR
HCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]