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The map label for this gene is pcaH [H]

Identifier: 187928406

GI number: 187928406

Start: 1412771

End: 1413520

Strand: Direct

Name: pcaH [H]

Synonym: Rpic_1318

Alternate gene names: 187928406

Gene position: 1412771-1413520 (Clockwise)

Preceding gene: 187928404

Following gene: 187928407

Centisome position: 35.83

GC content: 65.47

Gene sequence:

>750_bases
ATGACCCTGCCGCTTTCCGGCACTGGTGAATTCGCCCAGCGCGACACCGCGCAGCATCCGCCCGCACTGACCCCCGGCTA
CAAGACCAGCGTGCTGCGCTCGCCGCGCAACGCGCTCATCTCCACCCTGAATACGCTGTCCGAGACCACCGCACCGGTGT
TCCATGCCGACGATCTCGGCGTGCTCGACAACGATCTGATCCTCAACTACGCCAAGGAGGGCCTGCCGATCGGCGAGCGC
ATCATCGTCCACGGCTACGTGCGCGACGAGTTCGGCCGCCCCGTGCCGAACGCGCTGGTGGAGGTGTGGCAGGCCAACGC
CGGCGGCCGCTATCGCCACAAGAAAGACCAGTACATCGCGCCGATCGACCCGAACTTTGGCGGCTGCGGCCGCATGCTGA
CGAACGCCAACGGCTACTACGTCTATCGCACGATCAAGCCCGGCCCGTATCCGTGGCGCAATCGCATCAACGATTGGCGC
CCGTCGCACATCCATTACTCGCTCTCGGGCGATGGCTGGGCCCAGCGCCTCATCACGCAGATGTACTTCGAGGGCGATCC
GATGATCGCGCAGTGCCCGATCATCAAGACCATCCCGAGCGAAGAGCAGGTGCGTGGTCTGATCGCGCTGCACGACACGG
CGAACCACGTGCCGCTCGACAGCCGCTGCTACCGCTTCGACATCACGCTGCGCGGCCGCCGTGCCACGCATTTCGAAAAC
GCCGTGCCCGCCCTGCAAGGAGCCAAGTGA

Upstream 100 bases:

>100_bases
TTTCCATAACTTGGGGTTATCGATTTTCCGATAAGAAGTCAATTTACTTCACTTTTTGTCGGCGATACAGTCTCTGCACG
ATTTCATAAGGAGACGCCCC

Downstream 100 bases:

>100_bases
TGACCACGACCACACTGCGTGAATCGCTCGAACGTGCGCAGGCAACGGCCATGACGACAACGCCGCCGTTCGCGCATTTC
AACGAGACCGCATCGCAGAC

Product: protocatechuate 3,4-dioxygenase subunit beta

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTLPLSGTGEFAQRDTAQHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGVLDNDLILNYAKEGLPIGER
IIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTNANGYYVYRTIKPGPYPWRNRINDWR
PSHIHYSLSGDGWAQRLITQMYFEGDPMIAQCPIIKTIPSEEQVRGLIALHDTANHVPLDSRCYRFDITLRGRRATHFEN
AVPALQGAK

Sequences:

>Translated_249_residues
MTLPLSGTGEFAQRDTAQHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGVLDNDLILNYAKEGLPIGER
IIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTNANGYYVYRTIKPGPYPWRNRINDWR
PSHIHYSLSGDGWAQRLITQMYFEGDPMIAQCPIIKTIPSEEQVRGLIALHDTANHVPLDSRCYRFDITLRGRRATHFEN
AVPALQGAK
>Mature_248_residues
TLPLSGTGEFAQRDTAQHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGVLDNDLILNYAKEGLPIGERI
IVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTNANGYYVYRTIKPGPYPWRNRINDWRP
SHIHYSLSGDGWAQRLITQMYFEGDPMIAQCPIIKTIPSEEQVRGLIALHDTANHVPLDSRCYRFDITLRGRRATHFENA
VPALQGAK

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 27920; Mature: 27789

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPLSGTGEFAQRDTAQHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLG
CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCC
VLDNDLILNYAKEGLPIGERIIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIA
CCCCHHHHHHHHCCCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEC
PIDPNFGGCGRMLTNANGYYVYRTIKPGPYPWRNRINDWRPSHIHYSLSGDGWAQRLITQ
CCCCCCCCCCHHHCCCCCEEEEEEECCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHH
MYFEGDPMIAQCPIIKTIPSEEQVRGLIALHDTANHVPLDSRCYRFDITLRGRRATHFEN
HHHCCCCCEEECCEEEECCCHHHHEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHH
AVPALQGAK
HCCCCCCCC
>Mature Secondary Structure 
TLPLSGTGEFAQRDTAQHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLG
CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCC
VLDNDLILNYAKEGLPIGERIIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIA
CCCCHHHHHHHHCCCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEC
PIDPNFGGCGRMLTNANGYYVYRTIKPGPYPWRNRINDWRPSHIHYSLSGDGWAQRLITQ
CCCCCCCCCCHHHCCCCCEEEEEEECCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHH
MYFEGDPMIAQCPIIKTIPSEEQVRGLIALHDTANHVPLDSRCYRFDITLRGRRATHFEN
HHHCCCCCEEECCEEEECCCHHHHEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHH
AVPALQGAK
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704; 8063101 [H]